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2020 – today
- 2022
[j8]Sven Thiele
, Axel von Kamp, Pavlos Stephanos Bekiaris, Philipp Schneider, Steffen Klamt:
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks. Bioinform. 38(5): 1467-1469 (2022)
2010 – 2019
- 2019
- [j7]Sven Thiele, Sandra Heise, Wiebke Hessenkemper, Hannes Bongartz, Melissa Fensky, Fred Schaper, Steffen Klamt:
Designing Optimal Experiments to Discriminate Interaction Graph Models. IEEE ACM Trans. Comput. Biol. Bioinform. 16(3): 925-935 (2019) - 2017
- [j6]Sylvain Prigent, Clémence Frioux, Simon M. Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel:
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Comput. Biol. 13(1) (2017) - 2015
- [j5]Sven Thiele, Luca Cerone, Julio Saez-Rodriguez, Anne Siegel, Carito Guziolowski, Steffen Klamt:
Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies. BMC Bioinform. 16: 345:1-345:13 (2015) - [j4]Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Martin Gebser, Jacques Nicolas, Julio Saez-Rodriguez, Torsten Schaub, Anne Siegel:
Learning Boolean logic models of signaling networks with ASP. Theor. Comput. Sci. 599: 79-101 (2015) - 2014
- [j3]Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez:
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming. Bioinform. 30(13): 1942 (2014) - 2013
- [j2]Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez:
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming. Bioinform. 29(18): 2320-2326 (2013) - [c13]Philippe Bordron, Damien Eveillard, Alejandro Maass, Anne Siegel, Sven Thiele:
An ASP Application in Integrative Biology: Identification of Functional Gene Units. LPNMR 2013: 206-218 - [c12]Guillaume Collet, Damien Eveillard, Martin Gebser, Sylvain Prigent, Torsten Schaub, Anne Siegel, Sven Thiele:
Extending the Metabolic Network of Ectocarpus Siliculosus Using Answer Set Programming. LPNMR 2013: 245-256 - 2012
- [b1]Sven Thiele:
Modeling biological systems with Answer Set Programming. University of Potsdam, 2012 - [c11]Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel:
Revisiting the Training of Logic Models of Protein Signaling Networks with ASP. CMSB 2012: 342-361 - [i2]Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel:
Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming. CoRR abs/1210.0690 (2012) - 2011
- [j1]Martin Gebser, Torsten Schaub, Sven Thiele, Philippe Veber:
Detecting inconsistencies in large biological networks with answer set programming. Theory Pract. Log. Program. 11(2-3): 323-360 (2011) - 2010
- [c10]Martin Gebser, Arne König, Torsten Schaub, Sven Thiele, Philippe Veber:
The BioASP Library: ASP Solutions for Systems Biology. ICTAI (1) 2010: 383-389 - [c9]Martin Gebser, Carito Guziolowski, Mihail Ivanchev, Torsten Schaub, Anne Siegel, Sven Thiele, Philippe Veber:
Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming. KR 2010 - [i1]Martin Gebser, Torsten Schaub, Sven Thiele, Philippe Veber:
Detecting Inconsistencies in Large Biological Networks with Answer Set Programming. CoRR abs/1007.0134 (2010)
2000 – 2009
- 2009
- [c8]Torsten Schaub, Sven Thiele:
Metabolic Network Expansion with Answer Set Programming. ICLP 2009: 312-326 - [c7]Martin Gebser, Roland Kaminski, Max Ostrowski, Torsten Schaub, Sven Thiele:
On the Input Language of ASP Grounder Gringo. LPNMR 2009: 502-508 - 2008
- [c6]Martin Gebser, Torsten Schaub, Sven Thiele, Björn Usadel, Philippe Veber:
Detecting Inconsistencies in Large Biological Networks with Answer Set Programming. ICLP 2008: 130-144 - [c5]Martin Gebser, Roland Kaminski, Benjamin Kaufmann, Max Ostrowski, Torsten Schaub, Sven Thiele:
Engineering an Incremental ASP Solver. ICLP 2008: 190-205 - 2007
- [c4]James P. Delgrande, Daphne H. Liu, Torsten Schaub, Sven Thiele:
COBA 2.0: A Consistency-Based Belief Change System. ECSQARU 2007: 78-90 - [c3]Martin Gebser, Torsten Schaub, Sven Thiele:
GrinGo : A New Grounder for Answer Set Programming. LPNMR 2007: 266-271 - 2006
- [c2]Jean Gressmann, Tomi Janhunen, Robert E. Mercer, Torsten Schaub, Sven Thiele, Richard Tichy:
On Probing and Multi-Threading in Platypus. ECAI 2006: 392-396 - 2005
- [c1]Jean Gressmann, Tomi Janhunen, Robert E. Mercer, Torsten Schaub, Sven Thiele, Richard Tichy:
Platypus: A Platform for Distributed Answer Set Solving. LPNMR 2005: 227-239
Coauthor Index
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