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Journal Articles
- 2023
[j16]Véronique Geoffroy, Jean-Baptiste Lamouche, Thomas Guignard, Samuel Nicaise, Arnaud Kress, Sophie Scheidecker, Antony Le Béchec, Jean Muller
:
The AnnotSV webserver in 2023: updated visualization and ranking. Nucleic Acids Res. 51(W1): 39-45 (2023)- 2021
- [j15]Véronique Geoffroy, Thomas Guignard, Arnaud Kress, Jean-Baptiste Gaillard, Tor Solli-Nowlan, Audrey Schalk, Vincent Gatinois, Hélène Dollfus, Sophie Scheidecker, Jean Muller:
AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis. Nucleic Acids Res. 49(Webserver-Issue): 21-28 (2021) - 2018
- [j14]Véronique Geoffroy, Yvan Herenger, Arnaud Kress, Corinne Stoetzel, Amélie Piton, Hélène Dollfus, Jean Muller:
AnnotSV: an integrated tool for structural variations annotation. Bioinform. 34(20): 3572-3574 (2018) - 2012
- [j13]Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
MSV3d: database of human MisSense variants mapped to 3D protein structure. Database J. Biol. Databases Curation 2012 (2012) - [j12]Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork:
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res. 40(Database-Issue): 284-289 (2012) - [j11]Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
KD4v: comprehensible knowledge discovery system for missense variant. Nucleic Acids Res. 40(Web-Server-Issue): 71-75 (2012) - 2011
- [j10]Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, Christian von Mering:
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39(Database-Issue): 561-568 (2011) - [j9]Christopher J. Creevey, Jean Muller, Tobias Doerks, Julie Dawn Thompson, Detlev Arendt, Peer Bork:
Identifying Single Copy Orthologs in Metazoa. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j8]Jean Muller, Christopher J. Creevey, Julie Dawn Thompson, Detlev Arendt, Peer Bork:
AQUA: automated quality improvement for multiple sequence alignments. Bioinform. 26(2): 263-265 (2010) - [j7]Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn, Sean Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, Peer Bork:
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Res. 38(Database-Issue): 190-195 (2010) - 2009
- [j6]Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering:
STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37(Database-Issue): 412-416 (2009) - 2008
- [j5]Nicolas Wicker, Jean Muller, Ravi Kiran Reddy Kalathur, Olivier Poch:
A maximum likelihood approximation method for Dirichlet's parameter estimation. Comput. Stat. Data Anal. 52(3): 1315-1322 (2008) - [j4]Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork:
eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res. 36(Database-Issue): 250-254 (2008) - 2006
- [j3]Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte:
ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res. 34(Database-Issue): 338-343 (2006) - 2005
- [j2]Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch:
GOAnno: GO annotation based on multiple alignment. Bioinform. 21(9): 2095-2096 (2005) - 2003
- [j1]Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch:
PipeAlign: a new toolkit for protein family analysis. Nucleic Acids Res. 31(13): 3829-3832 (2003)
Coauthor Index
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