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Journal Articles
- 2022
[j33]Yu Li
, Siyuan Chen, Trisevgeni Rapakoulia, Hiroyuki Kuwahara, Kevin Y. Yip, Xin Gao:
Deep learning identifies and quantifies recombination hotspot determinants. Bioinform. 38(10): 2683-2691 (2022)- [j32]Chenyang Hong, Qin Cao, Zhenghao Zhang, Stephen Kwok-Wing Tsui, Kevin Y. Yip:
Reusability report: Capturing properties of biological objects and their relationships using graph neural networks. Nat. Mach. Intell. 4(3): 222-226 (2022) - 2020
- [j31]Edwin Yu-Kiu Ho, Qin Cao, Mengting Gu, Ricky Wai-Lun Chan, Qiong Wu, Mark Gerstein, Kevin Y. Yip:
Shaping the nebulous enhancer in the era of high-throughput assays and genome editing. Briefings Bioinform. 21(3): 836-850 (2020) - [j30]Chenyang Hong, Kevin Y. Yip:
Flexible k-mers with variable-length indels for identifying binding sequences of protein dimers. Briefings Bioinform. 21(5): 1787-1797 (2020) - [j29]Qin Cao, Zhenghao Zhang, Alexander Xi Fu, Qiong Wu, Tin-Lap Lee, Eric Lo, Alfred S. L. Cheng, Chao Cheng, Danny Leung, Kevin Y. Yip:
A unified framework for integrative study of heterogeneous gene regulatory mechanisms. Nat. Mach. Intell. 2(8): 447-456 (2020) - 2018
- [j28]Danny Kit-Sang Yip, Landon L. Chan, Iris K. Pang, Wei Jiang, Nelson L. S. Tang, Weichuan Yu, Kevin Y. Yip:
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility. Bioinform. 34(10): 1741-1749 (2018) - [j27]Andrew Ching-Yuet To, David Ho-Ting Chu, Angela Ruoning Wang, Frances Cheuk-Yau Li, Alan Wai-On Chiu, Daisy Yuwei Gao, Chung Hang Jonathan Choi, Siu-Kai Kong, Ting-Fung Chan, King-Ming Chan, Kevin Y. Yip:
A comprehensive web tool for toehold switch design. Bioinform. 34(16): 2862-2864 (2018) - 2017
- [j26]Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan:
OMBlast: alignment tool for optical mapping using a seed-and-extend approach. Bioinform. 33(3): 311-319 (2017) - [j25]Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan:
OMTools: a software package for visualizing and processing optical mapping data. Bioinform. 33(18): 2933-2935 (2017) - 2016
- [j24]Xihao Hu, Yang Wu, Zhi John Lu, Kevin Y. Yip:
Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations. Briefings Bioinform. 17(6): 1032-1043 (2016) - [j23]Xihao Hu, Christina Huan Shi, Kevin Y. Yip:
A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps. Bioinform. 32(12): 111-120 (2016) - 2014
- [j22]Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip:
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30(8): 1049-1055 (2014) - [j21]Alex Chun-Hong Fok, Sunny Siu-Nam Mok, Sau Dan Lee, Kevin Y. Yip:
ECplot: an online tool for making standardized plots from large datasets for bioinformatics publications. Bioinform. 30(10): 1467-1468 (2014) - 2013
- [j20]Kevin Y. Yip, Ben Kao, Xinjie Zhu, Chun Kit Chui, Sau Dan Lee, David W. Cheung:
Mining Order-Preserving Submatrices from Data with Repeated Measurements. IEEE Trans. Knowl. Data Eng. 25(7): 1587-1600 (2013) - 2011
- [j19]Justin Jee, Joel S. Rozowsky, Kevin Y. Yip, Lucas Lochovsky, Robert D. Bjornson, Guoneng Zhong, Zhengdong D. Zhang, Yutao Fu, Jie Wang, Zhiping Weng, Mark Gerstein:
ACT: aggregation and correlation toolbox for analyses of genome tracks. Bioinform. 27(8): 1152-1154 (2011) - [j18]Wang Kay Ngai, Ben Kao, Reynold Cheng, Michael Chau, Sau Dan Lee, David W. Cheung, Kevin Y. Yip:
Metric and trigonometric pruning for clustering of uncertain data in 2D geometric space. Inf. Syst. 36(2): 476-497 (2011) - [j17]Smith Tsang, Ben Kao, Kevin Y. Yip, Wai-Shing Ho, Sau Dan Lee:
Decision Trees for Uncertain Data. IEEE Trans. Knowl. Data Eng. 23(1): 64-78 (2011) - 2009
- [j16]Kevin Y. Yip, Mark Gerstein:
Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions. Bioinform. 25(2): 243-250 (2009) - [j15]Kevin Y. Yip, Philip M. Kim, Drew McDermott, Mark Gerstein:
Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels. BMC Bioinform. 10 (2009) - [j14]Kevin Y. Yip, Lin Cheung, David W. Cheung, Liping Jing, Michael K. Ng:
A semi-supervised approach to projected clustering with applications to microarray data. Int. J. Data Min. Bioinform. 3(3): 229-259 (2009) - 2008
- [j13]Kevin Y. Yip, Prianka Patel, Philip M. Kim, Donald M. Engelman, Drew McDermott, Mark Gerstein:
An integrated system for studying residue coevolution in proteins. Bioinform. 24(2): 290-292 (2008) - [j12]Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung:
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. J. Am. Medical Informatics Assoc. 15(6): 783-786 (2008) - [j11]Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch:
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. J. Biomed. Informatics 41(5): 694-705 (2008) - 2007
- [j10]Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein:
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 23(8): 1048 (2007) - [j9]Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein:
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinform. 8(S-3) (2007) - [j8]Lin Cheung, David W. Cheung, Ben Kao, Kevin Y. Yip, Michael K. Ng:
On mining micro-array data by Order-Preserving Submatrix. Int. J. Bioinform. Res. Appl. 3(1): 42-64 (2007) - [j7]Minghua Zhang, Ben Kao, David W. Cheung, Kevin Y. Yip:
Mining periodic patterns with gap requirement from sequences. ACM Trans. Knowl. Discov. Data 1(2): 7 (2007) - 2006
- [j6]Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein:
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 22(23): 2968-2970 (2006) - [j5]Eric Lo, Kevin Y. Yip, King-Ip Lin, David W. Cheung:
Progressive skylining over Web-accessible databases. Data Knowl. Eng. 57(2): 122-147 (2006) - 2005
- [j4]Sio Iong Ao, Kevin Y. Yip, Michael K. Ng, David Wai-Lok Cheung, Pui-Yee Fong, Ian Melhado, Pak Chung Sham:
CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs. Bioinform. 21(8): 1735-1736 (2005) - 2004
- [j3]Remko de Knikker, Youjun Guo, Jin-Long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung:
A web services choreography scenario for interoperating bioinformatics applications. BMC Bioinform. 5: 25 (2004) - [j2]Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung:
Identifying projected clusters from gene expression profiles. J. Biomed. Informatics 37(5): 345-357 (2004) - [j1]Kevin Y. Yip, David W. Cheung, Michael K. Ng:
HARP: A Practical Projected Clustering Algorithm. IEEE Trans. Knowl. Data Eng. 16(11): 1387-1397 (2004)
Conference and Workshop Papers
- 2016
- [c13]Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip, Ting-Fung Chan, Siu-Ming Yiu:
Towards a More Accurate Error Model for BioNano Optical Maps. ISBRA 2016: 67-79 - 2009
- [c12]Smith Tsang, Ben Kao, Kevin Y. Yip, Wai-Shing Ho, Sau Dan Lee:
Decision Trees for Uncertain Data. ICDE 2009: 441-444 - 2008
- [c11]Chun Kit Chui, Ben Kao, Kevin Y. Yip, Sau Dan Lee:
Mining Order-Preserving Submatrices from Data with Repeated Measurements. ICDM 2008: 133-142 - [c10]Songhua Xu, Suchao Chen, Kevin Y. Yip, Francis C. M. Lau, Xueying Qin:
A Two-Stage Audio Retrieval Method for Searching Unannotated Audio Clips. ISM 2008: 334-339 - 2006
- [c9]Wang Kay Ngai, Ben Kao, Chun Kit Chui, Reynold Cheng, Michael Chau, Kevin Y. Yip:
Efficient Clustering of Uncertain Data. ICDM 2006: 436-445 - [c8]Kevin Y. Yip, Michael K. Ng, David W. Cheung:
Input Validation for Semi-supervised Clustering. ICDM Workshops 2006: 479-483 - [c7]Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung:
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. Pacific Symposium on Biocomputing 2006: 188-199 - 2005
- [c6]Kevin Y. Yip, David W. Cheung, Michael K. Ng:
On Discovery of Extremely Low-Dimensional Clusters using Semi-Supervised Projected Clustering. ICDE 2005: 329-340 - [c5]Lin Cheung, Kevin Y. Yip, David W. Cheung, Ben Kao, Michael K. Ng:
On Mining Micro-array data by Order-Preserving Submatrix. ICDE Workshops 2005: 1153 - [c4]Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein:
YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) 2005: 85-96 - [c3]Minghua Zhang, Ben Kao, David Wai-Lok Cheung, Kevin Y. Yip:
Mining Periodic Patterns with Gap Requirement from Sequences. SIGMOD Conference 2005: 623-633 - 2004
- [c2]Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung:
Identifying Projected Clusters from Gene Expression Profiles. BIBE 2004: 259-266 - 2003
- [c1]Kevin Y. Yip, David W. Cheung, Michael K. Ng:
A highly-usable projected clustering algorithm for gene expression profiles. BIOKDD 2003: 41-48
Coauthor Index
aka: David W. Cheung
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