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ORCIDAaron R. Quinlan
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Journal Articles
- 2022
[j19]Peter McHale
, Aaron R. Quinlan:
trfermikit: a tool to discover VNTR-associated deletions. Bioinform. 38(5): 1231-1234 (2022)- [j18]Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan:
Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies. BMC Bioinform. 23(1): 482 (2022) - [j17]Thomas J. Nicholas, Michael J. Cormier, Aaron R. Quinlan:
Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate. BMC Bioinform. 23(1): 490 (2022) - [j16]Hao Hou, Brent S. Pedersen, Aaron R. Quinlan:
Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 2(2): 132 (2022) - 2021
- [j15]Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan:
Unfazed: parent-of-origin detection for large and small de novo variants. Bioinform. 37(24): 4860-4861 (2021) - [j14]Hao Hou, Brent S. Pedersen, Aaron R. Quinlan:
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 1(6): 441-447 (2021) - 2020
- [j13]Jordan A. Berg, Jonathan R. Belyeu, Jeffrey T. Morgan, Yeyun Ouyang, Alex J. Bott, Aaron R. Quinlan, Jason Gertz, Jared Rutter:
XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data. PLoS Comput. Biol. 16(1) (2020) - 2018
- [j12]Brent S. Pedersen, Aaron R. Quinlan:
Mosdepth: quick coverage calculation for genomes and exomes. Bioinform. 34(5): 867-868 (2018) - [j11]Brent S. Pedersen, Aaron R. Quinlan:
hts-nim: scripting high-performance genomic analyses. Bioinform. 34(19): 3387-3389 (2018) - [j10]Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve:
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Res. 46(Webserver-Issue): W186-W193 (2018) - 2017
- [j9]Brent S. Pedersen, Aaron R. Quinlan:
cyvcf2: fast, flexible variant analysis with Python. Bioinform. 33(12): 1867-1869 (2017) - [j8]Ryan M. Layer, Aaron R. Quinlan:
A Parallel Algorithm for $N$-Way Interval Set Intersection. Proc. IEEE 105(3): 542-551 (2017) - 2015
- [j7]Michael R. Lindberg, Ira M. Hall, Aaron R. Quinlan:
Population-based structural variation discovery with Hydra-Multi. Bioinform. 31(8): 1286-1289 (2015) - 2014
- [j6]Nicholas J. Loman, Aaron R. Quinlan:
Poretools: a toolkit for analyzing nanopore sequence data. Bioinform. 30(23): 3399-3401 (2014) - 2013
- [j5]Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan:
Binary Interval Search: a scalable algorithm for counting interval intersections. Bioinform. 29(1): 1-7 (2013) - [j4]Umadevi Paila, Brad A. Chapman, Rory D. Kirchner, Aaron R. Quinlan:
GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations. PLoS Comput. Biol. 9(7) (2013) - 2011
- [j3]Derek W. Barnett, Erik K. Garrison, Aaron R. Quinlan, Michael Strömberg, Gabor T. Marth:
BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinform. 27(12): 1691-1692 (2011) - [j2]Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan:
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinform. 27(24): 3423-3424 (2011) - 2010
- [j1]Aaron R. Quinlan, Ira M. Hall:
BEDTools: a flexible suite of utilities for comparing genomic features. Bioinform. 26(6): 841-842 (2010)
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