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ORCIDMiguel O. Bernabeu
Miguel Oscar Bernabeu
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2020 – today
- 2024
[c21]Ben Philps
, Maria del C. Valdés Hernández, Susana Muñoz Maniega, Mark E. Bastin, Eleni Sakka, Una Clancy, Joanna M. Wardlaw, Miguel O. Bernabeu:
Stochastic Uncertainty Quantification Techniques Fail to Account for Inter-analyst Variability in White Matter Hyperintensity Segmentation. MIUA (1) 2024: 34-53- [i18]Justin Engelmann, Diana Moukaddem, Lucas Gago, Niall C. Strang, Miguel O. Bernabeu:
Applicability of oculomics for individual risk prediction: Repeatability and robustness of retinal Fractal Dimension using DART and AutoMorph. CoRR abs/2403.06950 (2024) - [i17]Justin Engelmann, Miguel O. Bernabeu:
Training a high-performance retinal foundation model with half-the-data and 400 times less compute. CoRR abs/2405.00117 (2024) - [i16]Jamie Burke, Justin Engelmann, Charlene Hamid, Diana Moukaddem, Dan Pugh, Neeraj Dhaun, Amos J. Storkey, Niall C. Strang, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Ian J. C. MacCormick:
Domain-specific augmentations with resolution agnostic self-attention mechanism improves choroid segmentation in optical coherence tomography images. CoRR abs/2405.14453 (2024) - 2023
- [j18]Nusa Faric, Sue Hinder, Robin Williams, Rishi Ramaesh, Miguel O. Bernabeu, Edwin van Beek, Kathrin M. Cresswell:
Early experiences of integrating an artificial intelligence-based diagnostic decision support system into radiology settings: a qualitative study. J. Am. Medical Informatics Assoc. 31(1): 24-34 (2023) - [j17]Jessica R. Crawshaw, Jennifer A. Flegg, Miguel O. Bernabeu, James M. Osborne:
Mathematical models of developmental vascular remodelling: A review. PLoS Comput. Biol. 19(8) (2023) - [c20]Nusa Faric, Sue Hinder, Robin Williams, Rishi Ramaesh, Miguel O. Bernabeu, Edwin van Beek, Kathrin M. Cresswell:
Early Experiences of Integrating an Artificial Intelligence-Based Diagnostic Decision Support System into Radiology Settings: A Qualitative Study. EFMI-STC 2023: 240-241 - [c19]Darwon Rashid, Ylenia Giarratano, Charlene Hamid, Thomas J. MacGillivray, Graciela Terrera Muniz, Craig Ritchie, Baljean Dhillon, Megan Reid-Schachter, Audrey Low, Maria-Eleni Dounavi, John T. O'Brien, Miguel O. Bernabeu:
Associations Between Retinal Microvasculature Changes and Gray Matter Volume in a Mid-Life Cohort at Risk of Developing Alzheimer's Disease. OMIA@MICCAI 2023: 1-10 - [c18]Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu:
QuickQual: Lightweight, Convenient Retinal Image Quality Scoring with Off-the-Shelf Pretrained Models. OMIA@MICCAI 2023: 32-41 - [c17]Fabian S. L. Yii, Thomas J. MacGillivray, Miguel O. Bernabeu:
Data Efficiency of Segment Anything Model for Optic Disc and Cup Segmentation. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI 2023: 336-346 - [c16]Jesse Phitidis, Alison Q. O'Neil, Stewart Wiseman, David Alexander Dickie, Eleni Sakka, Agniete Kampaite, William Whiteley, Miguel O. Bernabeu, Beatrice Alex, Joanna M. Wardlaw, Maria del C. Valdés Hernández:
Segmentation of White Matter Hyperintensities and Ischaemic Stroke Lesions in Structural MRI. MIUA 2023: 3-17 - [i15]Jamie Burke, Justin Engelmann, Charlene Hamid, Megan Reid-Schachter, Tom Pearson, Dan Pugh, Neeraj Dhaun, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Amos J. Storkey, Ian J. C. MacCormick:
Efficient and fully-automatic retinal choroid segmentation in OCT through DL-based distillation of a hand-crafted pipeline. CoRR abs/2307.00904 (2023) - [i14]Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu:
QuickQual: Lightweight, convenient retinal image quality scoring with off-the-shelf pretrained models. CoRR abs/2307.13646 (2023) - [i13]Justin Engelmann, Jamie Burke, Charlene Hamid, Megan Reid-Schachter, Dan Pugh, Neeraj Dhaun, Diana Moukaddem, Lyle Gray, Niall C. Strang, Paul McGraw, Amos J. Storkey, Paul J. Steptoe, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Ian J. C. MacCormick:
Choroidalyzer: An open-source, end-to-end pipeline for choroidal analysis in optical coherence tomography. CoRR abs/2312.02956 (2023) - 2022
- [j16]Justin Engelmann, Alice D. McTrusty, Ian J. C. MacCormick, Emma Pead, Amos J. Storkey, Miguel O. Bernabeu:
Detecting multiple retinal diseases in ultra-widefield fundus imaging and data-driven identification of informative regions with deep learning. Nat. Mac. Intell. 4(12): 1143-1154 (2022) - [c15]Darwon Rashid, Ylenia Giarratano, Charlene Hamid, Thomas J. MacGillivray, Graciela Terrera Muniz, Craig Ritchie, Baljean Dhillon, Miguel O. Bernabeu:
Analysing Optical Coherence Tomography Angiography of Mid-Life Persons at Risk of Developing Alzheimer's Disease Later in Life. OMIA@MICCAI 2022: 12-21 - [c14]Fabian S. L. Yii, Raman Dutt, Thomas J. MacGillivray, Baljean Dhillon, Miguel O. Bernabeu, Niall C. Strang:
Rethinking Retinal Image Quality: Treating Quality Threshold as a Tunable Hyperparameter. OMIA@MICCAI 2022: 73-83 - [c13]Justin Engelmann, Ana Villaplana-Velasco, Amos J. Storkey, Miguel O. Bernabeu:
Robust and Efficient Computation of Retinal Fractal Dimension Through Deep Approximation. OMIA@MICCAI 2022: 84-93 - [i12]Justin Engelmann, Alice D. McTrusty, Ian J. C. MacCormick, Emma Pead, Amos J. Storkey, Miguel O. Bernabeu:
Detection of multiple retinal diseases in ultra-widefield fundus images using deep learning: data-driven identification of relevant regions. CoRR abs/2203.06113 (2022) - [i11]Justin Engelmann, Ana Villaplana-Velasco, Amos J. Storkey, Miguel O. Bernabeu:
Robust and efficient computation of retinal fractal dimension through deep approximation. CoRR abs/2207.05757 (2022) - 2021
- [j15]Lowell T. Edgar, Claudio A. Franco, Holger Gerhardt, Miguel O. Bernabeu:
On the preservation of vessel bifurcations during flow-mediated angiogenic remodelling. PLoS Comput. Biol. 17(2) (2021) - [c12]Darwon Rashid, Sophie Cai, Ylenia Giarratano, Calum D. Gray, Charlene Hamid, Dilraj S. Grewal, Tom J. MacGillivray, Sharon Fekrat, Cason B. Robbins, Srinath Soundararajan, Justin P. Ma, Miguel O. Bernabeu:
Reproducibility of Retinal Vascular Phenotypes Obtained with Optical Coherence Tomography Angiography: Importance of Vessel Segmentation. MIUA 2021: 238-249 - [i10]Gabriele Beltramo, Rayna Andreeva, Ylenia Giarratano, Miguel O. Bernabeu, Rik Sarkar, Primoz Skraba:
Euler Characteristic Surfaces. CoRR abs/2102.08260 (2021) - [i9]Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu:
Global explainability in aligned image modalities. CoRR abs/2112.09591 (2021) - 2020
- [j14]Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan:
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5(47): 1848 (2020) - [c11]Rayna Andreeva, Alessandro Fontanella, Ylenia Giarratano, Miguel O. Bernabeu:
DR Detection Using Optical Coherence Tomography Angiography (OCTA): A Transfer Learning Approach with Robustness Analysis. OMIA@MICCAI 2020: 11-20 - [c10]Ylenia Giarratano, Alisa Pavel, Jie Lian, Rayna Andreeva, Alessandro Fontanella, Rik Sarkar, Laura J. Reid, Shareen Forbes, Dan Pugh, Tariq E. Farrah, Neeraj Dhaun, Baljean Dhillon, Thomas J. MacGillivray, Miguel O. Bernabeu:
A Framework for the Discovery of Retinal Biomarkers in Optical Coherence Tomography Angiography (OCTA). OMIA@MICCAI 2020: 155-164
2010 – 2019
- 2019
- [i8]Ylenia Giarratano, Eleonora Bianchi, Calum D. Gray, Andrew Morris, Tom J. MacGillivray, Baljean Dhillon, Miguel O. Bernabeu:
Automated and Network Structure Preserving Segmentation of Optical Coherence Tomography Angiograms. CoRR abs/1912.09978 (2019) - 2018
- [c9]James M. Osborne, Miguel O. Bernabeu:
A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. EMBC 2018: 4552-4555 - 2015
- [j13]Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen:
An automated multiscale ensemble simulation approach for vascular blood flow. J. Comput. Sci. 9: 150-155 (2015) - [j12]Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane:
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11(4) (2015) - [c8]Miguel O. Bernabeu, Yang Lu, Jan Lammer, Lloyd Paul Aiello, Peter V. Coveney, Jennifer K. Sun:
Characterization of parafoveal hemodynamics associated with diabetic retinopathy with adaptive optics scanning laser ophthalmoscopy and computational fluid dynamics. EMBC 2015: 8070-8073 - [i7]Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen:
An automated multiscale ensemble simulation approach for vascular blood flow. CoRR abs/1504.07795 (2015) - 2014
- [j11]Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper, Joe Pitt-Francis:
Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. 28(1): 13-32 (2014) - [j10]James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane:
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10(3) (2014) - [c7]Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney:
Weighted Decomposition in High-Performance Lattice-Boltzmann Simulations: Are Some Lattice Sites More Equal than Others? EASC 2014: 28-38 - [i6]Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney:
Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others? CoRR abs/1410.4713 (2014) - 2013
- [j9]Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. J. Comput. Sci. 4(5): 412-422 (2013) - [j8]Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan:
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9(3) (2013) - [i5]Miguel O. Bernabeu, Claudio A. Franco, Martin Jones, Jens H. Nielsen, Timm Krüger, Rupert W. Nash, Derek Groen, James Hetherington, Holger Gerhardt, Peter V. Coveney:
Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. CoRR abs/1311.1640 (2013) - 2012
- [i4]Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment. CoRR abs/1209.3972 (2012) - [i3]Hywel B. Carver, Derek Groen, James Hetherington, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Coalesced communication: a design pattern for complex parallel scientific software. CoRR abs/1210.4400 (2012) - [i2]Derek Groen, Joris Borgdorff, Carles Bona-Casas, James Hetherington, Rupert W. Nash, Stefan J. Zasada, Ilya Saverchenko, Mariusz Mamonski, Krzysztof Kurowski, Miguel O. Bernabeu, Alfons G. Hoekstra, Peter V. Coveney:
Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. CoRR abs/1211.2963 (2012) - [i1]Miguel O. Bernabeu, Rupert W. Nash, Derek Groen, Hywel B. Carver, James Hetherington, Timm Krüger, Peter V. Coveney:
Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk. CoRR abs/1211.5292 (2012) - 2011
- [j7]Pedro Alonso, Miguel Oscar Bernabeu, Víctor M. García, Antonio M. Vidal:
Implementation and tuning of a parallel symmetric Toeplitz eigensolver. J. Parallel Distributed Comput. 71(3): 485-494 (2011) - [c6]Nejib Zemzemi, Miguel O. Bernabeu, Javier Saiz, Blanca Rodríguez:
Simulating Drug-Induced Effects on the Heart: From Ion Channel to Body Surface Electrocardiogram. FIMH 2011: 259-266 - [c5]Miguel O. Bernabeu, David Kay:
Scalable parallel preconditioners for an open source cardiac electrophysiology simulation package. ICCS 2011: 821-830 - 2010
- [j6]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis:
Simulating cardiac electrophysiology using anisotropic mesh adaptivity. J. Comput. Sci. 1(2): 82-88 (2010) - [j5]Miguel O. Bernabeu, Pras Pathmanathan, Joe Pitt-Francis, David Kay:
Stimulus Protocol Determines the Most Computationally Efficient Preconditioner for the Bidomain Equations. IEEE Trans. Biomed. Eng. 57(12): 2806-2815 (2010) - [c4]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis:
Anisotropic mesh adaptivity for cardiac electrophysiology. ICCS 2010: 935-944
2000 – 2009
- 2009
- [j4]Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan:
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180(12): 2452-2471 (2009) - 2008
- [j3]Antonio M. Vidal, Víctor M. García, Pedro Alonso, Miguel Oscar Bernabeu:
Parallel computation of the eigenvalues of symmetric Toeplitz matrices through iterative methods. J. Parallel Distributed Comput. 68(8): 1113-1121 (2008) - [j2]Miguel Oscar Bernabeu, Pedro Alonso, Antonio M. Vidal:
A multilevel parallel algorithm to solve symmetric Toeplitz linear systems. J. Supercomput. 44(3): 237-256 (2008) - 2007
- [j1]Miguel O. Bernabeu, Mariam Taroncher, Víctor M. García, Ana Vidal:
Robust Parallel Implementation of a Lanczos-based Algorithm for an Structured Electromagnetic Eigenvalue Problem. Scalable Comput. Pract. Exp. 8(3) (2007) - [c3]Pedro Alonso, Miguel Oscar Bernabeu, Antonio-Manuel Vidal-Maciá:
An Adaptive Interface for the Efficient Computation of the Discrete Sine Transform. PPAM 2007: 89-98 - 2006
- [c2]Pedro Alonso, Miguel Oscar Bernabeu, Antonio M. Vidal:
A Parallel Solution of Hermitian Toeplitz Linear Systems, . International Conference on Computational Science (1) 2006: 348-355 - [c1]Miguel Oscar Bernabeu, Mariam Taroncher, Víctor M. García, Ana Vidal:
Parallel Implementation in PC Clusters of a Lanczos-based Algorithm for an Electromagnetic Eigenvalue Problem. ISPDC 2006: 296-300
Coauthor Index
Thomas J. MacGillivray
aka: Tom J. MacGillivray
aka: Tom J. MacGillivray
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last updated on 2024-10-07 22:24 CEST by the dblp team
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