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ORCIDMiguel O. Bernabeu
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2020 – today
- 2020
[d1]Fergus R. Cooper
, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan:
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5(47): 1848 (2020)
2010 – 2019
- 2019
- [i8]Ylenia Giarratano, Eleonora Bianchi, Calum D. Gray, Andrew Morris, Tom J. MacGillivray, Baljean Dhillon, Miguel O. Bernabeu:
Automated and Network Structure Preserving Segmentation of Optical Coherence Tomography Angiograms. CoRR abs/1912.09978 (2019) - 2018
- [c9]James M. Osborne, Miguel O. Bernabeu:
A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. EMBC 2018: 4552-4555 - 2015
- [j13]Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen:
An automated multiscale ensemble simulation approach for vascular blood flow. J. Comput. Sci. 9: 150-155 (2015) - [j12]Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane:
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11(4) (2015) - [c8]Miguel O. Bernabeu, Yang Lu, Jan Lammer, Lloyd Paul Aiello, Peter V. Coveney, Jennifer K. Sun:
Characterization of parafoveal hemodynamics associated with diabetic retinopathy with adaptive optics scanning laser ophthalmoscopy and computational fluid dynamics. EMBC 2015: 8070-8073 - [i7]Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen:
An automated multiscale ensemble simulation approach for vascular blood flow. CoRR abs/1504.07795 (2015) - 2014
- [j11]Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper, Joe Pitt-Francis:
Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. 28(1): 13-32 (2014) - [j10]James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane:
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10(3) (2014) - [c7]Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney:
Weighted Decomposition in High-Performance Lattice-Boltzmann Simulations: Are Some Lattice Sites More Equal than Others? EASC 2014: 28-38 - [i6]Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney:
Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others? CoRR abs/1410.4713 (2014) - 2013
- [j9]Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. J. Comput. Sci. 4(5): 412-422 (2013) - [j8]Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan:
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9(3) (2013) - [i5]Miguel O. Bernabeu, Claudio A. Franco, Martin Jones, Jens H. Nielsen, Timm Krüger, Rupert W. Nash, Derek Groen, James Hetherington, Holger Gerhardt, Peter V. Coveney:
Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. CoRR abs/1311.1640 (2013) - 2012
- [i4]Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment. CoRR abs/1209.3972 (2012) - [i3]Hywel B. Carver, Derek Groen, James Hetherington, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Coalesced communication: a design pattern for complex parallel scientific software. CoRR abs/1210.4400 (2012) - [i2]Derek Groen, Joris Borgdorff, Carles Bona-Casas, James Hetherington, Rupert W. Nash, Stefan J. Zasada, Ilya Saverchenko, Mariusz Mamonski, Krzysztof Kurowski, Miguel O. Bernabeu, Alfons G. Hoekstra, Peter V. Coveney:
Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. CoRR abs/1211.2963 (2012) - [i1]Miguel O. Bernabeu, Rupert W. Nash, Derek Groen, Hywel B. Carver, James Hetherington, Timm Krüger, Peter V. Coveney:
Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk. CoRR abs/1211.5292 (2012) - 2011
- [j7]Pedro Alonso, Miguel Oscar Bernabeu, Víctor M. García, Antonio M. Vidal:
Implementation and tuning of a parallel symmetric Toeplitz eigensolver. J. Parallel Distributed Comput. 71(3): 485-494 (2011) - [c6]Nejib Zemzemi, Miguel O. Bernabeu, Javier Saiz, Blanca Rodríguez:
Simulating Drug-Induced Effects on the Heart: From Ion Channel to Body Surface Electrocardiogram. FIMH 2011: 259-266 - [c5]Miguel O. Bernabeu, David Kay:
Scalable parallel preconditioners for an open source cardiac electrophysiology simulation package. ICCS 2011: 821-830 - 2010
- [j6]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis:
Simulating cardiac electrophysiology using anisotropic mesh adaptivity. J. Comput. Sci. 1(2): 82-88 (2010) - [j5]Miguel O. Bernabeu, Pras Pathmanathan, Joe Pitt-Francis, David Kay:
Stimulus Protocol Determines the Most Computationally Efficient Preconditioner for the Bidomain Equations. IEEE Trans. Biomed. Eng. 57(12): 2806-2815 (2010) - [c4]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis:
Anisotropic mesh adaptivity for cardiac electrophysiology. ICCS 2010: 935-944
2000 – 2009
- 2009
- [j4]Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan:
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180(12): 2452-2471 (2009) - 2008
- [j3]Antonio M. Vidal, Víctor M. García, Pedro Alonso, Miguel Oscar Bernabeu:
Parallel computation of the eigenvalues of symmetric Toeplitz matrices through iterative methods. J. Parallel Distributed Comput. 68(8): 1113-1121 (2008) - [j2]Miguel Oscar Bernabeu, Pedro Alonso, Antonio M. Vidal:
A multilevel parallel algorithm to solve symmetric Toeplitz linear systems. J. Supercomput. 44(3): 237-256 (2008) - 2007
- [j1]Miguel O. Bernabeu, Mariam Taroncher, Víctor M. García, Ana Vidal:
Robust Parallel Implementation of a Lanczos-based Algorithm for an Structured Electromagnetic Eigenvalue Problem. Scalable Comput. Pract. Exp. 8(3) (2007) - [c3]Pedro Alonso, Miguel Oscar Bernabeu, Antonio-Manuel Vidal-Maciá:
An Adaptive Interface for the Efficient Computation of the Discrete Sine Transform. PPAM 2007: 89-98 - 2006
- [c2]Pedro Alonso, Miguel Oscar Bernabeu, Antonio M. Vidal:
A Parallel Solution of Hermitian Toeplitz Linear Systems, . International Conference on Computational Science (1) 2006: 348-355 - [c1]Miguel Oscar Bernabeu, Mariam Taroncher, Víctor M. García, Ana Vidal:
Parallel Implementation in PC Clusters of a Lanczos-based Algorithm for an Electromagnetic Eigenvalue Problem. ISPDC 2006: 296-300
Coauthor Index
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