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Books and Theses
- 2011
[b1]Sara-Jane Nicole Dunn:
Towards a computational model of the colonic crypt with a realistic, deformable geometry. University of Oxford, UK, 2011
Journal Articles
- 2023
- [j6]Boyan Yordanov, Sara-Jane Dunn, Colin Gravill, Himanshu Arora, Hillel Kugler
, Christoph M. Wintersteiger:
The Reasoning Engine: A Satisfiability Modulo Theories-Based Framework for Reasoning About Discrete Biological Models. J. Comput. Biol. 30(9): 1046-1058 (2023) - 2021
- [j5]Sara-Jane Dunn, Hillel Kugler, Boyan Yordanov:
Formal Analysis of Network Motifs Links Structure to Function in Biological Programs. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 261-271 (2021) - 2016
- [j4]Yoli Shavit, Boyan Yordanov, Sara-Jane Dunn, Christoph M. Wintersteiger, Tomoki Otani, Youssef Hamadi, Frederick J. Livesey, Hillel Kugler:
Automated Synthesis and Analysis of Switching Gene Regulatory Networks. Biosyst. 146: 26-34 (2016) - 2014
- [j3]James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane:
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10(3) (2014) - 2013
- [j2]Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan:
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9(3) (2013) - 2012
- [j1]Sara-Jane Dunn, Paul L. Appleton, Scott A. Nelson, Inke S. Näthke, David Gavaghan, James M. Osborne:
A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath. PLoS Comput. Biol. 8(5) (2012)
Conference and Workshop Papers
- 2022
- [c5]Boyan Yordanov, Sara-Jane Dunn, Colin Gravill, Hillel Kugler, Christoph M. Wintersteiger:
An SMT-Based Framework for Reasoning About Discrete Biological Models. ISBRA 2022: 114-125 - 2018
- [c4]Sara-Jane Dunn:
Biological computation (keynote). CGO 2018: 1 - [c3]Hillel Kugler, Sara-Jane Dunn, Boyan Yordanov:
Formal Analysis of Network Motifs. CMSB 2018: 111-128 - 2016
- [c2]Peter Backeman, Christoph M. Wintersteiger, Boyan Yordanov, Sara-Jane Dunn:
Algebraic Polynomial-based Synthesis for Abstract Boolean Network Analysis. SMT@IJCAR 2016: 41-50 - 2015
- [c1]Yoli Shavit, Boyan Yordanov, Sara-Jane Dunn, Christoph M. Wintersteiger, Youssef Hamadi, Hillel Kugler:
Switching Gene Regulatory Networks. IPCAT 2015: 131-144
Parts in Books or Collections
- 2019
- [p1]Sara-Jane Dunn, Boyan Yordanov:
Automated Reasoning for the Synthesis and Analysis of Biological Programs. Automated Reasoning for Systems Biology and Medicine 2019: 37-62
Informal and Other Publications
- 2023
- [i1]Nan Rosemary Ke, Sara-Jane Dunn, Jörg Bornschein, Silvia Chiappa, Mélanie Rey, Jean-Baptiste Lespiau, Albin Cassirer, Jane X. Wang, Theophane Weber, David G. T. Barrett, Matthew M. Botvinick, Anirudh Goyal, Michael Mozer, Danilo J. Rezende:
DiscoGen: Learning to Discover Gene Regulatory Networks. CoRR abs/2304.05823 (2023)
Coauthor Index
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