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ORCIDArne Elofsson
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2020 – today
- 2020
[j40]Lifan Chen, Xiaoqin Tan, Dingyan Wang, Feisheng Zhong, Xiaohong Liu, Tianbiao Yang, Xiaomin Luo, Kaixian Chen, Hualiang Jiang, Mingyue Zheng
, Arne Elofsson:
TransformerCPI: improving compound-protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments. Bioinform. 36(16): 4406-4414 (2020)
2010 – 2019
- 2019
- [j39]Mirco Michel, David Menéndez Hurtado, Arne Elofsson:
PconsC4: fast, accurate and hassle-free contact predictions. Bioinform. 35(15): 2677-2679 (2019) - [j38]Arne Elofsson, Berk Hess, Erik Lindahl, Alexey Onufriev, David van der Spoel, Anders Wallqvist:
Ten simple rules on how to create open access and reproducible molecular simulations of biological systems. PLoS Comput. Biol. 15(1) (2019) - [j37]Walter Basile, Marco Salvatore, Claudio Bassot, Arne Elofsson:
Why do eukaryotic proteins contain more intrinsically disordered regions? PLoS Comput. Biol. 15(7) (2019) - 2017
- [j36]Niki L. Dimou, Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos:
GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. 33(10): 1521-1527 (2017) - [j35]Karolis Uziela, David Menéndez Hurtado, Nanjiang Shu, Björn Wallner, Arne Elofsson:
ProQ3D: improved model quality assessments using deep learning. Bioinform. 33(10): 1578-1580 (2017) - [j34]Mirco Michel, David Menéndez Hurtado, Karolis Uziela, Arne Elofsson:
Large-scale structure prediction by improved contact predictions and model quality assessment. Bioinform. 33(14): i23-i29 (2017) - [j33]Marco Salvatore, Per Warholm, Nanjiang Shu, Walter Basile, Arne Elofsson:
SubCons: a new ensemble method for improved human subcellular localization predictions. Bioinform. 33(16): 2464-2470 (2017) - [j32]Mirco Michel, Marcin J. Skwark, David Menéndez Hurtado, Magnus Ekeberg, Arne Elofsson:
Predicting accurate contacts in thousands of Pfam domain families using PconsC3. Bioinform. 33(18): 2859-2866 (2017) - [j31]Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Eva Schad, Antoine Schramm, Beata Szabo, Agnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - [j30]Walter Basile, Oxana Sachenkova, Sara Light, Arne Elofsson:
High GC content causes orphan proteins to be intrinsically disordered. PLoS Comput. Biol. 13(3) (2017) - 2016
- [j29]Christoph Peters, Konstantinos D. Tsirigos, Nanjiang Shu, Arne Elofsson:
Improved topology prediction using the terminal hydrophobic helices rule. Bioinform. 32(8): 1158-1162 (2016) - [j28]Sikander Hayat, Christoph Peters, Nanjiang Shu, Konstantinos D. Tsirigos, Arne Elofsson:
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins. Bioinform. 32(10): 1571-1573 (2016) - [j27]Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos:
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. 32(17): 665-671 (2016) - 2015
- [j26]Konstantinos D. Tsirigos, Christoph Peters, Nanjiang Shu, Lukas Käll, Arne Elofsson:
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides. Nucleic Acids Res. 43(Webserver-Issue): W401-W407 (2015) - 2014
- [j25]Mirco Michel, Sikander Hayat, Marcin J. Skwark, Chris Sander, Debora S. Marks, Arne Elofsson:
PconsFold: improved contact predictions improve protein models. Bioinform. 30(17): 482-488 (2014) - [j24]Marcin J. Skwark, Daniele Raimondi, Mirco Michel, Arne Elofsson:
Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns. PLoS Comput. Biol. 10(11) (2014) - 2013
- [j23]Marcin J. Skwark, Abbi Abdel-Rehim, Arne Elofsson:
PconsC: combination of direct information methods and alignments improves contact prediction. Bioinform. 29(14): 1815-1816 (2013) - [j22]Marcin J. Skwark, Arne Elofsson:
PconsD: ultra rapid, accurate model quality assessment for protein structure prediction. Bioinform. 29(14): 1817-1818 (2013) - 2012
- [j21]Sikander Hayat, Arne Elofsson:
BOCTOPUS: improved topology prediction of transmembrane β barrel proteins. Bioinform. 28(4): 516-522 (2012) - [j20]Sikander Hayat, Arne Elofsson:
Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions. Bioinform. 28(12): 90-96 (2012) - 2011
- [j19]Per Larsson, Marcin J. Skwark, Björn Wallner, Arne Elofsson:
Improved predictions by Pcons.net using multiple templates. Bioinform. 27(3): 426-427 (2011) - [j18]Aron Hennerdal, Arne Elofsson:
Rapid membrane protein topology prediction. Bioinform. 27(9): 1322-1323 (2011) - [j17]Nanjiang Shu, Arne Elofsson:
KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2. Bioinform. 27(12): 1702-1703 (2011) - 2010
- [j16]Kristoffer Illergård, Simone Callegari, Arne Elofsson:
MPRAP: An accessibility predictor for alpha-helical transmembrane proteins that performs well inside and outside the membrane. BMC Bioinform. 11: 333 (2010)
2000 – 2009
- 2009
- [j15]Andreas Bernsel, Håkan Viklund, Aron Hennerdal, Arne Elofsson:
TOPCONS: consensus prediction of membrane protein topology. Nucleic Acids Res. 37(Web-Server-Issue): 465-468 (2009) - 2008
- [j14]Håkan Viklund, Arne Elofsson:
OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar. Bioinform. 24(15): 1662-1668 (2008) - [j13]Håkan Viklund, Andreas Bernsel, Marcin J. Skwark, Arne Elofsson:
SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology. Bioinform. 24(24): 2928-2929 (2008) - 2007
- [j12]Björn Wallner, Per Larsson, Arne Elofsson:
Pcons.net: protein structure prediction meta server. Nucleic Acids Res. 35(Web-Server-Issue): 369-374 (2007) - 2006
- [j11]Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Robert M. MacCallum:
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps. BMC Bioinform. 7: 357 (2006) - [j10]Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res. 34(Web-Server-Issue): 169-172 (2006) - [j9]Åsa K. Björklund, Diana Ekman, Arne Elofsson:
Expansion of Protein Domain Repeats. PLoS Comput. Biol. 2(8) (2006) - [c2]Erik Granseth, Håkan Viklund, Arne Elofsson:
ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. ISMB (Supplement of Bioinformatics) 2006: 191-196 - 2005
- [j8]Björn Wallner, Arne Elofsson:
Pcons5: combining consensus, structural evaluation and fold recognition scores. Bioinform. 21(23): 4248-4254 (2005) - [j7]Tomas Ohlson, Arne Elofsson:
ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins. BMC Bioinform. 6: 253 (2005) - 2003
- [j6]Krzysztof Ginalski, Arne Elofsson, Daniel Fischer, Leszek Rychlewski:
3D-Jury: A Simple Approach to Improve Protein Structure Predictions. Bioinform. 19(8): 1015-1018 (2003) - 2002
- [j5]Pierre Dönnes, Arne Elofsson:
Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinform. 3: 25 (2002) - 2001
- [j4]Janusz M. Bujnicki, Arne Elofsson, Daniel Fischer, Leszek Rychlewski:
Structure prediction meta server. Bioinform. 17(8): 750-751 (2001) - [j3]Susana Cristobal, Adam Zemla, Daniel Fischer, Leszek Rychlewski, Arne Elofsson:
A study of quality measures for protein threading models. BMC Bioinform. 2: 5 (2001) - [c1]Olivia Eriksson, Yishao Zhou, Arne Elofsson:
Side Chain-Positioning as an Integer Programming Problem. WABI 2001: 128-141 - 2000
- [j2]Naomi Siew, Arne Elofsson, Leszek Rychlewski, Daniel Fischer:
MaxSub: an automated measure for the assessment of protein structure prediction quality. Bioinform. 16(9): 776-785 (2000)
1990 – 1999
- 1999
- [j1]Arne Elofsson, Erik L. L. Sonnhammer:
A comparison of sequence and structure protein domain families as a basis for structural genomics. Bioinform. 15(6): 480-500 (1999)
Coauthor Index
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