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ORCIDHaim J. Wolfson
Person information
- affiliation: Tel Aviv University, Blavatnik School of Computer Science, Israel
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2020 – today
- 2023
[j38]Jérôme Tubiana
, Lucia Adriana-Lifshits, Michael Nissan, Matan Gabay, Inbal Sher, Marina Sova, Haim J. Wolfson, Maayan Gal:
Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions. PLoS Comput. Biol. 19(2) (2023)- [c35]Mark Rozanov, Haim J. Wolfson:
SegmA: Residue Segmentation of cryo-EM density maps. BIBM 2023: 2191-2196
2010 – 2019
- 2018
- [c34]Mark Rozanov, Haim J. Wolfson:
AAnchor: CNN guided detection of anchor amino acids in high resolution cryo-EM density maps. BIBM 2018: 88-91 - 2017
- [j37]Michael Estrin, Haim J. Wolfson:
SnapDock - template-based docking by Geometric Hashing. Bioinform. 33(14): i30-i36 (2017) - 2016
- [j36]Daniel Zaidman, Haim J. Wolfson:
PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm. Bioinform. 32(15): 2289-2296 (2016) - [j35]Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson:
Memdock: an α-helical membrane protein docking algorithm. Bioinform. 32(16): 2444-2450 (2016) - [c33]Michael Zabejansky, Haim J. Wolfson:
Accelerating protein-protein complex validation by GPU based funnel generation. BIBM 2016: 150-155 - 2015
- [j34]Naama Amir, Dan Cohen, Haim J. Wolfson:
DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes. Bioinform. 31(17): 2801-2807 (2015) - [c32]Naama Amir, Dan Cohen, Haim J. Wolfson:
DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract). RECOMB 2015: 13-15 - 2011
- [j33]Ilona Kifer, Ruth Nussinov, Haim J. Wolfson:
GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinform. 27(7): 925-932 (2011) - [j32]Elad Donsky, Haim J. Wolfson:
PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors. Bioinform. 27(20): 2836-2842 (2011) - [j31]Elina Tjioe, Keren Lasker, Ben M. Webb, Haim J. Wolfson, Andrej Sali:
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map. Nucleic Acids Res. 39(Web-Server-Issue): 167-170 (2011) - [c31]Mira Abraham, Haim J. Wolfson:
Inexact Graph Matching by "Geodesic Hashing" for the Alignment of Pseudoknoted RNA Secondary Structures. Stringology 2011: 45-57 - [c30]Elad Donsky, Haim J. Wolfson:
PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract). WABI 2011: 73-75 - 2010
- [j30]Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson:
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Res. 38(Web-Server-Issue): 457-461 (2010)
2000 – 2009
- 2009
- [j29]Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. 49(10): 2333-2343 (2009) - [j28]Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res. 37(Database-Issue): 369-373 (2009) - 2008
- [j27]Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan:
Structural similarity of genetically interacting proteins. BMC Syst. Biol. 2: 69 (2008) - [j26]Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. 15(7): 737-754 (2008) - [j25]Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov:
MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Res. 36(Web-Server-Issue): 210-215 (2008) - [j24]Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. 36(Web-Server-Issue): 223-228 (2008) - [j23]Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson:
FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. 36(Web-Server-Issue): 229-232 (2008) - [j22]Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. 36(Web-Server-Issue): 260-264 (2008) - 2007
- [j21]Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 28-39 (2007) - [c29]Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB 2007: 412-429 - 2006
- [j20]Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov:
A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. 22(11): 1343-1352 (2006) - [j19]Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. J. Comput. Biol. 13(2): 407-428 (2006) - [j18]Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res. 34(Web-Server-Issue): 412-415 (2006) - 2005
- [j17]Yuval Inbar, Haim J. Wolfson, Ruth Nussinov:
Multiple Docking for Protein Structure Prediction. Int. J. Robotics Res. 24(2-3): 131-150 (2005) - [j16]Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Res. 33(Web-Server-Issue): 337-341 (2005) - [j15]Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 33(Web-Server-Issue): 363-367 (2005) - [c28]Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife 2005: 91-103 - [c27]Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
ARTS: alignment of RNA tertiary structures. ECCB/JBI 2005: 53 - [c26]Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB 2005: 440-455 - [c25]Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Discovery of Protein Substructures in EM Maps. WABI 2005: 423-434 - 2004
- [j14]Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. J. Comput. Biol. 11(1): 83-106 (2004) - [j13]Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson:
BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. 32(Web-Server-Issue): 503-507 (2004) - [c24]Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson:
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI 2004: 194-205 - 2003
- [c23]Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson:
MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) 2003: 95-104 - [c22]Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson:
Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) 2003: 158-168 - [c21]Haim J. Wolfson:
Spatial Pattern Detection in Structural Bioinformatics. Mathematical Methods for Protein Structure Analysis and Design 2003: 35-56 - 2002
- [c20]Dina Duhovny, Ruth Nussinov, Haim J. Wolfson:
Efficient Unbound Docking of Rigid Molecules. WABI 2002: 185-200 - [c19]Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI 2002: 235-250 - 2001
- [j12]Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov:
Protein flexibility and electrostatic interactions. IBM J. Res. Dev. 45(3): 499-512 (2001) - [j11]Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov:
A hierarchical, building-block-based computational scheme for protein structure prediction. IBM J. Res. Dev. 45(3): 513-524 (2001) - [j10]Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson:
MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. J. Comput. Biol. 8(2): 93-121 (2001) - 2000
- [c18]Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson:
Alignment of Flexible Protein Structures. ISMB 2000: 329-343
1990 – 1999
- 1999
- [c17]Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson:
Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB 1999: 169-177 - 1998
- [j9]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. J. Comput. Biol. 5(4): 631-654 (1998) - [c16]Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson:
[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics 1998 - 1996
- [j8]Konstantin Y. Kupeev, Haim J. Wolfson:
A new method of estimating shape similarity. Pattern Recognit. Lett. 17(8): 873-887 (1996) - [c15]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
Docking of Conformationally Flexible Proteins. CPM 1996: 271-287 - 1995
- [j7]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Comput. Appl. Biosci. 11(1): 87-99 (1995) - [j6]Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun:
Context-free attentional operators: The generalized symmetry transform. Int. J. Comput. Vis. 14(2): 119-130 (1995) - 1994
- [c14]Daniel Fischer, Shuo L. Lin, Ruth Nussinov, Haim J. Wolfson:
Docking of protein molecules. ICPR (2) 1994: 145-149 - [c13]Konstantin Y. Kupeev, Haim J. Wolfson:
On shape similarity. ICPR (1) 1994: 227-231 - [c12]Efi Cohen, Haim J. Wolfson:
Partial matching of 3-D objects in CAD/CAM systems. ICPR (1) 1994: 483-487 - 1993
- [c11]Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson:
3-D Docking of Protein Molecules. CPM 1993: 20-34 - 1992
- [c10]Daniel Fischer, Ruth Nussinov, Haim J. Wolfson:
3-D Substructure Matching in Protein Molecules. CPM 1992: 136-150 - 1991
- [j5]Eyal Kishon, Trevor Hastie, Haim J. Wolfson:
3-D curve matching using splines. J. Field Robotics 8(6): 723-743 (1991) - [j4]Haim J. Wolfson:
Generalizing the generalized hough transform. Pattern Recognit. Lett. 12(8): 565-573 (1991) - [c9]Yehezkel Lamdan, Haim J. Wolfson:
On the error analysis of 'geometric hashing'. CVPR 1991: 22-27 - [c8]Avinoam Beinglass, Haim J. Wolfson:
Articulated object recognition, or: how to generalize the generalized Hough transform. CVPR 1991: 461-466 - 1990
- [j3]Haim J. Wolfson:
On curve matching. IEEE Trans. Pattern Anal. Mach. Intell. 12(5): 483-489 (1990) - [j2]Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson:
Affine invariant model-based object recognition. IEEE Trans. Robotics Autom. 6(5): 578-589 (1990) - [c7]Haim J. Wolfson:
Model-Based Object Recognition by Geometric Hashing. ECCV 1990: 526-536 - [c6]Eyal Kishon, Trevor Hastie, Haim J. Wolfson:
3-D Curve Matching Using Splines. ECCV 1990: 589-591 - [c5]Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun:
Detection of interest points using symmetry. ICCV 1990: 62-65
1980 – 1989
- 1989
- [j1]Grigore C. Burdea, Haim J. Wolfson:
Solving jigsaw puzzles by a robot. IEEE Trans. Robotics Autom. 5(6): 752-764 (1989) - 1988
- [c4]Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson:
Object recognition by affine invariant matching. CVPR 1988: 335-344 - [c3]Yehezkel Lamdan, Haim J. Wolfson:
Geometric Hashing: A General And Efficient Model-based Recognition Scheme. ICCV 1988: 238-249 - [c2]Jiawei Hong, Haim J. Wolfson:
An improved model-based matching method using footprints. ICPR 1988: 72-78 - [c1]Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson:
On recognition of 3-D objects from 2-D images. ICRA 1988: 1407-1413
Coauthor Index
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