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Journal Articles
- 2023
[j19]Björn Wallner
:
AFsample: improving multimer prediction with AlphaFold using massive sampling. Bioinform. 39(9) (2023)- [j18]Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan:
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023) - 2022
- [j17]Isak Johansson-Åkhe, Björn Wallner:
InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol. Bioinform. 38(12): 3209-3215 (2022) - [j16]Isak Johansson-Åkhe, Björn Wallner:
Improving peptide-protein docking with AlphaFold-Multimer using forced sampling. Frontiers Bioinform. 2 (2022) - 2021
- [j15]Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner:
InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network. Frontiers Bioinform. 1 (2021) - 2020
- [j14]Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner:
InterPep2: global peptide-protein docking using interaction surface templates. Bioinform. 36(8): 2458-2465 (2020) - [j13]Claudio Mirabello, Björn Wallner:
InterLig: improved ligand-based virtual screening using topologically independent structural alignments. Bioinform. 36(10): 3266-3267 (2020) - 2018
- [j12]Claudio Mirabello, Björn Wallner:
Topology independent structural matching discovers novel templates for protein interfaces. Bioinform. 34(17): i787-i794 (2018) - 2017
- [j11]Karolis Uziela, David Menéndez Hurtado, Nanjiang Shu, Björn Wallner, Arne Elofsson:
ProQ3D: improved model quality assessments using deep learning. Bioinform. 33(10): 1578-1580 (2017) - [j10]Sankar Basu, Fredrik Söderquist, Björn Wallner:
Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins. J. Comput. Aided Mol. Des. 31(5): 453-466 (2017) - 2016
- [j9]Karolis Uziela, Björn Wallner:
ProQ2: estimation of model accuracy implemented in Rosetta. Bioinform. 32(9): 1411-1413 (2016) - [j8]Sankar Basu, Björn Wallner:
Finding correct protein-protein docking models using ProQDock. Bioinform. 32(12): 262-270 (2016) - 2014
- [j7]Björn Wallner:
ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling. Bioinform. 30(15): 2221-2223 (2014) - 2012
- [j6]Arjun Ray, Erik Lindahl, Björn Wallner:
Improved model quality assessment using ProQ2. BMC Bioinform. 13: 224 (2012) - 2011
- [j5]Per Larsson, Marcin J. Skwark, Björn Wallner, Arne Elofsson:
Improved predictions by Pcons.net using multiple templates. Bioinform. 27(3): 426-427 (2011) - 2010
- [j4]Arjun Ray, Erik Lindahl, Björn Wallner:
Model quality assessment for membrane proteins. Bioinform. 26(24): 3067-3074 (2010) - [j3]Edward J. Bertaccini, Björn Wallner, James R. Trudell, Erik Lindahl:
Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4. J. Chem. Inf. Model. 50(12): 2248-2255 (2010) - 2007
- [j2]Björn Wallner, Per Larsson, Arne Elofsson:
Pcons.net: protein structure prediction meta server. Nucleic Acids Res. 35(Web-Server-Issue): 369-374 (2007) - 2005
- [j1]Björn Wallner, Arne Elofsson:
Pcons5: combining consensus, structural evaluation and fold recognition scores. Bioinform. 21(23): 4248-4254 (2005)
Coauthor Index
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