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2020 – today
- 2023
[j9]Ludvig Larsson, Lovisa Franzén
, Patrik L. Ståhl, Joakim Lundeberg:
Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization. Bioinform. 39(10) (2023)- [i1]Ludvig Bergenstråhle, Jens Lagergren, Joakim Lundeberg:
Learning Stationary Markov Processes with Contrastive Adjustment. CoRR abs/2303.05497 (2023) - 2021
- [j8]Alma Andersson, Joakim Lundeberg:
sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling. Bioinform. 37(17): 2644-2650 (2021) - 2020
- [j7]Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg:
SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation. BMC Bioinform. 21(1): 161 (2020)
2010 – 2019
- 2019
- [j6]José Fernández Navarro, Joakim Lundeberg, Patrik L. Ståhl:
ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets. Bioinform. 35(6): 1058-1060 (2019) - 2018
- [j5]Kim Wong, José Fernández Navarro, Ludvig Bergenstråhle, Patrik L. Ståhl, Joakim Lundeberg:
ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets. Bioinform. 34(11): 1966-1968 (2018) - 2017
- [j4]José Fernández Navarro, Joel Sjöstrand, Fredrik Salmén, Joakim Lundeberg, Patrik L. Ståhl:
ST Pipeline: an automated pipeline for spatial mapping of unique transcripts. Bioinform. 33(16): 2591-2593 (2017) - 2014
- [j3]Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad:
BESST - Efficient scaffolding of large fragmented assemblies. BMC Bioinform. 15: 281 (2014) - 2012
- [j2]Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad:
Improved gap size estimation for scaffolding algorithms. Bioinform. 28(17): 2215-2222 (2012) - 2010
- [j1]Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg:
Classification of DNA sequences using Bloom filters. Bioinform. 26(13): 1595-1600 (2010)
Coauthor Index
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