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Lars Arvestad
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2010 – 2019
- 2018
- [j17]Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin:
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34(21): 3646-3652 (2018) - [j16]Lars Arvestad:
alv: a console-based viewer for molecular sequence alignments. J. Open Source Softw. 3(31): 955 (2018) - 2017
- [j15]Raja Ali, Mikael Bark, Jorge Miró, Sayyed Muhammad, Joel Sjöstrand, Syed M. Zubair, Raja M. Abbas, Lars Arvestad:
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces. BMC Bioinform. 18(1): 97:1-97:8 (2017) - [j14]Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad:
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias. J. Comput. Biol. 24(6): 581-589 (2017) - 2016
- [j13]Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad:
Assembly scaffolding with PE-contaminated mate-pair libraries. Bioinform. 32(13): 1925-1932 (2016) - [j12]Mehmood Alam Khan, Owais Mahmudi, Ikram Ullah, Lars Arvestad, Jens Lagergren:
Probabilistic inference of lateral gene transfer events. BMC Bioinform. 17(S-14): 263-270 (2016) - [c5]Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad:
Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias. RECOMB 2016: 176-188 - 2015
- [c4]Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti:
Hierarchical Assembly of Pools. IWBBIO (2) 2015: 207-218 - 2014
- [j11]Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad:
BESST - Efficient scaffolding of large fragmented assemblies. BMC Bioinform. 15: 281 (2014) - 2013
- [j10]Joel Sjöstrand, Lars Arvestad, Jens Lagergren, Bengt Sennblad:
GenPhyloData: realistic simulation of gene family evolution. BMC Bioinform. 14: 209 (2013) - [j9]Mehmood Alam Khan, Isaac Elias, Erik Sjölund, Kristina Nylander, Roman Valls Guimera, Richard Schobesberger, Peter Schmitzberger, Jens Lagergren, Lars Arvestad:
fastphylo: Fast tools for phylogenetics. BMC Bioinform. 14: 334 (2013) - [j8]Raja Ali, Sayyed Muhammad, Mehmood Alam Khan, Lars Arvestad:
Quantitative synteny scoring improves homology inference and partitioning of gene families. BMC Bioinform. 14(S-15): S12 (2013) - [j7]Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti:
GAM-NGS: genomic assemblies merger for next generation sequencing. BMC Bioinform. 14(S-7): S6 (2013) - 2012
- [j6]Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad:
Improved gap size estimation for scaffolding algorithms. Bioinform. 28(17): 2215-2222 (2012) - [j5]Joel Sjöstrand, Bengt Sennblad, Lars Arvestad, Jens Lagergren:
DLRS: gene tree evolution in light of a species tree. Bioinform. 28(22): 2994-2995 (2012) - 2010
- [j4]Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg:
Classification of DNA sequences using Bloom filters. Bioinform. 26(13): 1595-1600 (2010)
2000 – 2009
- 2009
- [j3]Lars Arvestad, Jens Lagergren, Bengt Sennblad:
The gene evolution model and computing its associated probabilities. J. ACM 56(2): 7:1-7:44 (2009) - 2007
- [j2]Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad:
primetv: a viewer for reconciled trees. BMC Bioinform. 8 (2007) - 2006
- [j1]Örjan Svensson, Lars Arvestad, Jens Lagergren:
Genome-Wide Survey for Biologically Functional Pseudogenes. PLoS Comput. Biol. 2(5) (2006) - 2004
- [c3]Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad:
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB 2004: 326-335 - 2003
- [c2]Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad:
Bayesian gene/species tree reconciliation and orthology analysis using MCMC. ISMB (Supplement of Bioinformatics) 2003: 7-15
1990 – 1999
- 1997
- [c1]Lars Arvestad:
Aligning Coding DNA in the Presence of Frame-Shift Errors. CPM 1997: 180-190
Coauthor Index
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