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2020 – today
- 2025
[j30]Dong Wang, Jieyu Jin, Guqin Shi, Jingxiao Bao, Zheng Wang, Shimeng Li, Peichen Pan, Dan Li, Yu Kang, Tingjun Hou:
ADMET evaluation in drug discovery: 21. Application and industrial validation of machine learning algorithms for Caco-2 permeability prediction. J. Cheminformatics 17(1): 3 (2025)- [j29]Wenjia Qian, Xiaorui Wang
, Yuansheng Huang, Yu Kang, Peichen Pan, Chang-Yu Hsieh, Tingjun Hou:
Deep Learning-Driven Insights into Enzyme-Substrate Interaction Discovery. J. Chem. Inf. Model. 65(1): 187-200 (2025) - [j28]Shicheng Chen, Odin Zhang, Chenran Jiang, Huifeng Zhao, Xujun Zhang, Mengting Chen, Yun Liu, Qun Su, Zhenxing Wu, Xinyue Wang, Wanglin Qu, Yuanyi Ye, Xin Chai, Ning Wang, Tianyue Wang, Yuan An, Guanlin Wu, Qianqian Yang, Jiean Chen, Wei Xie, Haitao Lin, Dan Li, Chang-Yu Hsieh, Yong Huang, Yu Kang, Tingjun Hou, Peichen Pan:
Deep lead optimization enveloped in protein pocket and its application in designing potent and selective ligands targeting LTK protein. Nat. Mac. Intell. 7(3): 448-458 (2025) - 2024
- [j27]Xing Zhang, Jianbo Tong, Tianhao Wang, Tianyue Wang, Lei Xu, Zhe Wang, Tingjun Hou, Peichen Pan:
Dissecting the role of ALK double mutations in drug resistance to lorlatinib with in-depth theoretical modeling and analysis. Comput. Biol. Medicine 169: 107815 (2024) - [j26]Tianhao Wang, Jianbo Tong, Xing Zhang, Zhe Wang, Lei Xu, Peichen Pan, Tingjun Hou:
Structure-based virtual screening of novel USP5 inhibitors targeting the zinc finger ubiquitin-binding domain. Comput. Biol. Medicine 174: 108397 (2024) - [j25]Xing Zhang, Jianbo Tong, Tianhao Wang, Zhe Wang, Shukai Gu, Lei Xu, Tingjun Hou, Peichen Pan:
In-depth theoretical modeling to explore the mechanism of TPX-0131 overcoming lorlatinib resistance to ALKL1196M/G1202R mutation. Comput. Biol. Medicine 183: 109265 (2024) - [j24]Wenjia Qian, Xiaorui Wang, Yu Kang, Peichen Pan, Tingjun Hou, Chang-Yu Hsieh:
A general model for predicting enzyme functions based on enzymatic reactions. J. Cheminformatics 16(1): 38 (2024) - [j23]Mingyang Wang, Zhengjian Wu, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Xiaojun Yao, Zhitong Bing, Chang-Yu Hsieh, Tingjun Hou:
Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling Chemical Space. J. Chem. Inf. Model. 64(4): 1213-1228 (2024) - [i2]Odin Zhang, Yufei Huang, Shichen Cheng, Mengyao Yu, Xujun Zhang, Haitao Lin, Yundian Zeng, Mingyang Wang, Zhenxing Wu, Huifeng Zhao, Zaixi Zhang, Chenqing Hua, Yu Kang, Sunliang Cui, Peichen Pan, Chang-Yu Hsieh, Tingjun Hou:
Deep Geometry Handling and Fragment-wise Molecular 3D Graph Generation. CoRR abs/2404.00014 (2024) - [i1]Odin Zhang, Haitao Lin, Hui Zhang, Huifeng Zhao, Yufei Huang, Yuansheng Huang, Dejun Jiang, Chang-Yu Hsieh, Peichen Pan, Tingjun Hou:
Deep Lead Optimization: Leveraging Generative AI for Structural Modification. CoRR abs/2404.19230 (2024) - 2023
- [j22]Xujun Zhang, Chao Shen, Tianyue Wang, Yafeng Deng, Yu Kang, Dan Li, Tingjun Hou, Peichen Pan:
ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions. Briefings Bioinform. 24(5) (2023) - [j21]Xujun Zhang, Chao Shen, Dejun Jiang, Jintu Zhang, Qing Ye, Lei Xu, Tingjun Hou, Peichen Pan, Yu Kang:
TB-IECS: an accurate machine learning-based scoring function for virtual screening. J. Cheminformatics 15(1): 63 (2023) - [j20]Zhe Wang, Haiyang Zhong, Jintu Zhang, Peichen Pan, Dong Wang, Huanxiang Liu, Xiaojun Yao, Tingjun Hou, Yu Kang:
Small-Molecule Conformer Generators: Evaluation of Traditional Methods and AI Models on High-Quality Data Sets. J. Chem. Inf. Model. 63(21): 6525-6536 (2023) - [j19]Xujun Zhang, Odin Zhang, Chao Shen, Wanglin Qu, Shicheng Chen, Hanqun Cao, Yu Kang, Zhe Wang, Ercheng Wang, Jintu Zhang, Yafeng Deng, Furui Liu, Tianyue Wang, Hongyan Du, Langcheng Wang, Peichen Pan, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou:
Efficient and accurate large library ligand docking with KarmaDock. Nat. Comput. Sci. 3(9): 789-804 (2023) - [j18]Odin Zhang, Tianyue Wang, Gaoqi Weng, Dejun Jiang, Ning Wang, Xiaorui Wang, Huifeng Zhao, Jialu Wu, Ercheng Wang, Guangyong Chen, Yafeng Deng, Peichen Pan, Yu Kang, Chang-Yu Hsieh, Tingjun Hou:
Learning on topological surface and geometric structure for 3D molecular generation. Nat. Comput. Sci. 3(10): 849-859 (2023) - 2022
- [j17]Gaoang Wang, Jiahui Yu, Hongyan Du, Chao Shen, Xujun Zhang, Yifei Liu, Yangyang Zhang, Dong-Sheng Cao, Peichen Pan, Tingjun Hou:
VGSC-DB: an online database of voltage-gated sodium channels. J. Cheminformatics 14(1): 75 (2022) - [j16]Mingyang Wang, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Honglin Li, Chang-Yu Hsieh, Tingjun Hou:
ReMODE: a deep learning-based web server for target-specific drug design. J. Cheminformatics 14(1): 84 (2022) - [j15]Jason Cong, Jason Lau, Gai Liu, Stephen Neuendorffer, Peichen Pan, Kees A. Vissers, Zhiru Zhang:
FPGA HLS Today: Successes, Challenges, and Opportunities. ACM Trans. Reconfigurable Technol. Syst. 15(4): 51:1-51:42 (2022) - no results
2010 – 2019
- 2019
- [j14]Chen Zhang, Guangyu Sun, Zhenman Fang, Peipei Zhou, Peichen Pan, Jason Cong:
Caffeine: Toward Uniformed Representation and Acceleration for Deep Convolutional Neural Networks. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 38(11): 2072-2085 (2019) - 2017
- [j13]Jun Shang, Huiyong Sun, Hui Liu, Fu Chen, Sheng Tian, Peichen Pan, Dan Li, De-Xin Kong, Tingjun Hou:
Comparative analyses of structural features and scaffold diversity for purchasable compound libraries. J. Cheminformatics 9(1): 25:1-25:16 (2017) - 2016
- [c16]Chen Zhang, Zhenman Fang, Peipei Zhou, Peichen Pan, Jason Cong:
Caffeine: towards uniformed representation and acceleration for deep convolutional neural networks. ICCAD 2016: 12:1-12:8 - [c15]Jason Cong, Muhuan Huang, Peichen Pan, Di Wu, Peng Zhang:
Software Infrastructure for Enabling FPGA-Based Accelerations in Data Centers: Invited Paper. ISLPED 2016: 154-155 - [p1]Jason Cong, Muhuan Huang, Peichen Pan, Yuxin Wang, Peng Zhang:
Source-to-Source Optimization for HLS. FPGAs for Software Programmers 2016: 137-163 - [r2]Peichen Pan:
Sequential Circuit Technology Mapping. Encyclopedia of Algorithms 2016: 1952-1956 - 2015
- [j12]Peichen Pan, Sheng Tian, Huiyong Sun, Xiaotian Kong, Wenfang Zhou, Dan Li, Youyong Li, Tingjun Hou:
Identification and Preliminary SAR Analysis of Novel Type-I Inhibitors of TIE-2 via Structure-Based Virtual Screening and Biological Evaluation in in vitro Models. J. Chem. Inf. Model. 55(12): 2693-2704 (2015) - 2014
- [j11]Sheng Tian, Huiyong Sun, Peichen Pan, Dan Li, Xuechu Zhen, Youyong Li, Tingjun Hou:
Assessing an Ensemble Docking-Based Virtual Screening Strategy for Kinase Targets by Considering Protein Flexibility. J. Chem. Inf. Model. 54(10): 2664-2679 (2014) - 2013
- [j10]Peichen Pan, Youyong Li, Huidong Yu, Huiyong Sun, Tingjun Hou:
Molecular Principle of Topotecan Resistance by Topoisomerase I Mutations through Molecular Modeling Approaches. J. Chem. Inf. Model. 53(4): 997-1006 (2013) - [j9]Sheng Tian, Huiyong Sun, Youyong Li, Peichen Pan, Dan Li, Tingjun Hou:
Development and Evaluation of an Integrated Virtual Screening Strategy by Combining Molecular Docking and Pharmacophore Searching Based on Multiple Protein Structures. J. Chem. Inf. Model. 53(10): 2743-2756 (2013) - no results
2000 – 2009
- 2008
- [r1]Peichen Pan:
Sequential Circuit Technology Mapping. Encyclopedia of Algorithms 2008 - 2006
- [j8]Deming Chen, Jason Cong, Peichen Pan:
FPGA Design Automation: A Survey. Found. Trends Electron. Des. Autom. 1(3) (2006) - 2002
- [j7]Parthasarathi Dasgupta, Peichen Pan, Subhas C. Nandy, Bhargab B. Bhattacharya:
Monotone bipartitioning problem in a planar point set with applications to VLSI. ACM Trans. Design Autom. Electr. Syst. 7(2): 231-248 (2002) - no results
1990 – 1999
- 1999
- [j6]Peichen Pan, C. L. Liu:
Partial Scan with Preselected Scan Signals. IEEE Trans. Computers 48(9): 1000-1005 (1999) - [c14]Peichen Pan:
Performance-Driven Integration of Retiming and Resynthesis. DAC 1999: 243-246 - [c13]Peichen Pan, Guohua Chen:
Optimal Retiming for Initial State Computation. VLSI Design 1999: 366-371 - [c12]Prashant Saxena, Peichen Pan, C. L. Liu:
The Retiming of Single-Phase Clocked Circuits Containing Level-Sensitive Latches. VLSI Design 1999: 402-407 - 1998
- [j5]Peichen Pan, Arvind K. Karandikar, C. L. Liu:
Optimal clock period clustering for sequential circuits with retiming. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 17(6): 489-498 (1998) - [j4]Peichen Pan, C. L. Liu:
Optimal clock period FPGA technology mapping for sequential circuits. ACM Trans. Design Autom. Electr. Syst. 3(3): 437-462 (1998) - [c11]Peichen Pan, Chih-Chang Lin:
A New Retiming-Based Technology Mapping Algorithm for LUT-based FPGAs. FPGA 1998: 35-42 - [c10]Unni Narayanan, Peichen Pan, C. L. Liu:
Low power logic synthesis under a general delay model. ISLPED 1998: 209-214 - 1997
- [j3]Peichen Pan, Sai-keung Dong, C. L. Liu:
Optimal Graph Constraint Reduction for Symbolic Layout Compaction. Algorithmica 18(4): 560-574 (1997) - [c9]Peichen Pan:
Continuous Retiming: Algorithms and Applications. ICCD 1997: 116-121 - [c8]Arvind K. Karandikar, Peichen Pan, C. L. Liu:
Optimal Clock Period Clustering for Sequential Circuits with Retiming. ICCD 1997: 122-127 - 1996
- [j2]Peichen Pan, Weiping Shi, C. L. Liu:
Area Minimization for Hierarchical Floorplans. Algorithmica 15(6): 550-571 (1996) - [c7]Peichen Pan, C. L. Liu:
Optimal Clock Period FPGA Technology Mapping for Sequential Circuits. DAC 1996: 720-725 - [c6]Xiangfeng Chen, Peichen Pan, C. L. Liu:
Desensitization for Power Reduction in Sequential Circuits. DAC 1996: 795-800 - [c5]Peichen Pan, C. L. Liu:
Technology Mapping of Sequential Circuits for LUT-Based FPGAs for Performance. FPGA 1996: 58-64 - 1995
- [j1]Peichen Pan, C. L. Liu:
Area minimization for floorplans. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 14(1): 123-132 (1995) - [c4]Peichen Pan, C. L. Liu:
Partial Scan with Pre-selected Scan Signals. DAC 1995: 189-194 - 1994
- [c3]Peichen Pan, Weiping Shi, C. L. Liu:
Area minimization for hierarchical floorplans. ICCAD 1994: 436-440 - 1993
- [c2]Peichen Pan, Sai-keung Dong, C. L. Liu:
Optimal Graph Constraint Reduction for Symbolic Layout Compaction. DAC 1993: 401-406 - 1992
- [c1]Peichen Pan, C. L. Liu:
Area minimization for general floorplans. ICCAD 1992: 606-609 - no results
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