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Edans Flavius de Oliveira Sandes

Edans F. de O. Sandes

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Books and Theses

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2015
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Edans Flavius de Oliveira Sandes:
Algoritmos paralelos exatos e otimizações para alinhamento de sequências biológicas longas em plataformas de alto desempenho. University of Brasília, Brazil, 2015

Journal Articles

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2021
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Marco Antonio C. de Figueiredo, João Paulo Navarro, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo:
Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning. IEEE Trans. Parallel Distributed Syst. 32(12): 3053-3065 (2021)
2020
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Edans F. de O. Sandes, George Luiz Medeiros Teodoro, Alba C. M. A. Melo:
Bitmap filter: Speeding up exact set similarity joins with bitwise operations. Inf. Syst. 88 (2020)
2019
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Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, Genaína Nunes Rodrigues, George Luiz Medeiros Teodoro, Alba Cristina Magalhaes Alves de Melo:
MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL. Concurr. Comput. Pract. Exp. 31(11) (2019)
[j10]
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Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons. J. Comput. Biol. 26(9): 908-922 (2019)
2018
[j9]
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Jesús Pérez Serrano, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón:
DNA sequences alignment in multi-GPUs: acceleration and energy payoff. BMC Bioinform. 19-S(14): 161-176 (2018)
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Edans Flavius de Oliveira Sandes, George Luiz Medeiros Teodoro, Maria Emília M. T. Walter, Xavier Martorell, Eduard Ayguadé, Alba Cristina Magalhaes Alves de Melo:
Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. Comput. J. 61(5): 687-713 (2018)
2016
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Edans Flavius de Oliveira Sandes, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification. ACM Comput. Surv. 48(4): 63:1-63:36 (2016)
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Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo:
MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning. ACM Trans. Parallel Comput. 2(4): 28:1-28:31 (2016)
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Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo:
CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters. IEEE Trans. Parallel Distributed Syst. 27(10): 2838-2850 (2016)
2014
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Edans Flavius de Oliveira Sandes, Célia Ghedini Ralha, Alba Cristina Magalhaes Alves de Melo:
An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison. Expert Syst. Appl. 41(10): 4929-4938 (2014)
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Li Weigang, Edans F. de O. Sandes, Jianya Zheng, Alba Cristina Magalhaes Alves de Melo, Lorna Uden:
Querying dynamic communities in online social networks. J. Zhejiang Univ. Sci. C 15(2): 81-90 (2014)
2013
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Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo:
Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU. IEEE Trans. Parallel Distributed Syst. 24(5): 1009-1021 (2013)
2007
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Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Edans Flavius de Oliveira Sandes, Mauricio Ayala-Rincón:
An exact parallel algorithm to compare very long biological sequences in clusters of workstations. Clust. Comput. 10(2): 187-202 (2007)

Conference and Workshop Papers

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2020
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Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo:
Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning. PDP 2020: 22-29
2017
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Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands. AlCoB 2017: 167-179
[c9]
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Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón:
Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. IWBBIO (2) 2017: 512-523
2015
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Marco Antonio C. de Figueiredo, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo:
Parallel Megabase DNA Sequence Comparison with OpenCL. HiPC 2015: 436-445
2014
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Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé:
CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters. CCGRID 2014: 160-169
[c6]
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Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé:
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs. PPoPP 2014: 383-384
2013
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Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Andrea Queiroz Maranhão, Ildinete Silva-Pereira, Anamélia Lorenzetti Bocca, Ana Paula Junqueira-Kipnis, Maria Emília M. T. Walter, André Kipnis, Marcelo de Macedo Brígido:
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. BSB 2013: 202-213
2012
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Edans Flavius de Oliveira Sandes, Jacir Luiz Bordim, Alba Cristina Magalhaes Alves de Melo, Yasuaki Ito:
Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm. ICNC 2012: 247-253
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Edans Flavius de Oliveira Sandes, Li Weigang, Alba Cristina Magalhaes Alves de Melo:
Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner. WISE 2012: 726-736
2011
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Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo:
Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. IPDPS 2011: 1199-1211
2010
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Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo:
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPoPP 2010: 137-146

Informal and Other Publications

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2025
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Leandro Carísio Fernandes, Leandro dos Santos Ribeiro, Marcos Vinícius Borela de Castro, Leonardo Augusto da Silva Pacheco, Edans Flavius de Oliveira Sandes:
JurisTCU: A Brazilian Portuguese Information Retrieval Dataset with Query Relevance Judgments. CoRR abs/2503.08379 (2025)
2017
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Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Bitmap Filter: Speeding up Exact Set Similarity Joins with Bitwise Operations. CoRR abs/1711.07295 (2017)

Coauthor Index

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