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Julian Parkhill
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2020 – today
- 2022
- [j16]Yingbo Shen, Rong Zhang
, Dongyan Shao
, Lu Yang, Jiayue Lu
, Congcong Liu, Xueyang Wang, Junyao Jiang, Boxuan Wang
, Congming Wu, Julian Parkhill, Yang Wang, Timothy R. Walsh, George F. Gao, Zhangqi Shen:
Genomic Shift in Population Dynamics of mcr-1-positive Escherichia coli in Human Carriage. Genom. Proteom. Bioinform. 20(6): 1168-1179 (2022)
2010 – 2019
- 2016
- [j15]Lars Barquist
, Matthew Mayho, Carla A. Cummins
, Amy K. Cain
, Christine J. Boinett, Andrew J. Page
, Gemma C. Langridge
, Michael A. Quail, Jacqueline A. Keane
, Julian Parkhill:
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinform. 32(7): 1109-1111 (2016) - 2015
- [j14]Andrew J. Page
, Carla A. Cummins
, Martin Hunt
, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden
, Maria Fookes, Daniel Falush, Jacqueline A. Keane
, Julian Parkhill:
Roary: rapid large-scale prokaryote pan genome analysis. Bioinform. 31(22): 3691-3693 (2015) - 2014
- [j13]Andries J. van Tonder
, Shilan Mistry, James E. Bray
, Dorothea M. C. Hill, Alison J. Cody
, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg
, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley
, Martin C. J. Maiden
, Angela B. Brueggemann
:
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model. PLoS Comput. Biol. 10(8) (2014) - 2013
- [j12]Tim Carver, Simon R. Harris
, Thomas D. Otto
, Matthew Berriman
, Julian Parkhill
, Jacqueline A. McQuillan
:
BamView: visualizing and interpretation of next-generation sequencing read alignments. Briefings Bioinform. 14(2): 203-212 (2013) - 2012
- [j11]Tim Carver, Simon R. Harris
, Matthew Berriman
, Julian Parkhill
, Jacqueline A. McQuillan
:
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinform. 28(4): 464-469 (2012) - [j10]Francesc Coll
, Kim Mallard, Mark D. Preston
, Stephen D. Bentley, Julian Parkhill
, Ruth McNerney
, Nigel J. Martin, Taane G. Clark
:
SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinform. 28(22): 2991-2993 (2012) - [j9]Flora J. Logan-Klumpler, Nishadi De Silva
, Ulrike Böhme
, Matthew B. Rogers, Giles Velarde, Jacqueline A. McQuillan
, Tim Carver, Martin Aslett, Christian Olsen, Sandhya Subramanian, Isabelle Phan, Carol Farris, Siddhartha Mitra, Gowthaman Ramasamy, Haiming Wang, Adrian Tivey, Andrew Jackson, Robin Houston, Julian Parkhill
, Matthew T. G. Holden
, Omar S. Harb
, Brian P. Brunk, Peter J. Myler
, David S. Roos, Mark Carrington
, Deborah F. Smith, Christiane Hertz-Fowler
, Matthew Berriman:
GeneDB - an annotation database for pathogens. Nucleic Acids Res. 40(Database-Issue): 98-108 (2012) - 2010
- [j8]Tim Carver, Ulrike Böhme
, Thomas D. Otto
, Julian Parkhill
, Matthew Berriman
:
BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinform. 26(5): 676-677 (2010)
2000 – 2009
- 2009
- [j7]Tim J. Carver, Nick R. Thomson
, Alan J. Bleasby, Matthew Berriman
, Julian Parkhill
:
DNAPlotter: circular and linear interactive genome visualization. Bioinform. 25(1): 119-120 (2009) - [j6]Kathryn E. Holt
, Yik Y. Teo, Heng Li
, Satheesh Nair
, Gordon Dougan, John Wain
, Julian Parkhill
:
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25(16): 2074-2075 (2009) - 2008
- [j5]Tim J. Carver, Matthew Berriman
, Adrian Tivey, Chinmay Patel, Ulrike Böhme
, Bart Barrell, Julian Parkhill
, Marie-Adèle Rajandream:
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinform. 24(23): 2672-2676 (2008) - 2006
- [j4]Georgios S. Vernikos, Julian Parkhill
:
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Bioinform. 22(18): 2196-2203 (2006) - 2005
- [j3]Tim J. Carver, Kim Rutherford
, Matthew Berriman
, Marie-Adèle Rajandream, Bart Barrell, Julian Parkhill
:
ACT: the Artemis comparison tool. Bioinform. 21(16): 3422-3423 (2005) - 2004
- [j2]Christiane Hertz-Fowler
, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou
, Paul Mooney, Adrian Tivey, Matthew Berriman
, Neil Hall, Kim Rutherford
, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell:
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32(Database-Issue): 339-343 (2004) - 2000
- [j1]Kim Rutherford
, Julian Parkhill, James Crook, Terry Horsnell, Peter Rice, Marie-Adèle Rajandream, Bart Barrell:
Artemis: sequence visualization and annotation. Bioinform. 16(10): 944-945 (2000)
Coauthor Index
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