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ORCIDMarcel J. T. Reinders
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- affiliation: Delft University of Technology, Netherlands
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2020 – today
- 2024
[j91]Ramin Ghorbani
, Marcel J. T. Reinders, David M. J. Tax:
Personalized anomaly detection in PPG data using representation learning and biometric identification. Biomed. Signal Process. Control. 94: 106216 (2024)- [j90]Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz:
Predicting cell population-specific gene expression from genomic sequence. Frontiers Bioinform. 4 (2024) - [c68]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
PATE: Proximity-Aware Time Series Anomaly Evaluation. KDD 2024: 872-883 - [i9]Mahdi Naderibeni, Marcel J. T. Reinders, Liang Wu, David M. J. Tax:
Learning solutions of parametric Navier-Stokes with physics-informed neural networks. CoRR abs/2402.03153 (2024) - [i8]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
RESTAD: REconstruction and Similarity based Transformer for time series Anomaly Detection. CoRR abs/2405.07509 (2024) - [i7]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
PATE: Proximity-Aware Time series anomaly Evaluation. CoRR abs/2405.12096 (2024) - [i6]Pedro Mateus, Swier Garst, Jing Yu, Davy Cats, Alexander G. J. Harms, Mahlet A. Birhanu, Marian Beekman, P. Eline Slagboom, Marcel J. T. Reinders, Jeroen van der Grond, Andre Dekker, Jacobus F. A. Jansen, Magdalena Beran, Miranda T. Schram, Pieter Jelle Visser, Justine E. F. Moonen, Mohsen Ghanbari, Gennady Roshchupkin, Dina Vojinovic, Iñigo Bermejo, Hailiang Mei, Esther E. Bron:
MRI-based and metabolomics-based age scores act synergetically for mortality prediction shown by multi-cohort federated learning. CoRR abs/2409.01235 (2024) - 2023
- [j89]Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders:
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics. Briefings Bioinform. 25(1) (2023) - [j88]Abdul Rehman Khan, Marcel J. T. Reinders, Indu Khatri:
Determining epitope specificity of T-cell receptors with transformers. Bioinform. 39(11) (2023) - [j87]Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz:
Cell type matching across species using protein embeddings and transfer learning. Bioinform. 39(Supplement-1): 404-412 (2023) - [j86]J. M. Smit, Jesse H. Krijthe, W. M. R. Kant, J. A. Labrecque, M. Komorowski, D. A. M. P. J. Gommers, Jasper van Bommel, Marcel J. T. Reinders, Michel E. van Genderen:
Causal inference using observational intensive care unit data: a scoping review and recommendations for future practice. npj Digit. Medicine 6 (2023) - [c67]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
Self-Supervised PPG Representation Learning Shows High Inter-Subject Variability. ICMLT 2023: 127-132 - [c66]Soufiane Mourragui, Marco Loog, Mirrelijn M. van Nee, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Percolate: An Exponential Family JIVE Model to Design DNA-Based Predictors of Drug Response. RECOMB 2023: 120-138 - [i5]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
Personalized Anomaly Detection in PPG Data using Representation Learning and Biometric Identification. CoRR abs/2307.06380 (2023) - [i4]Michael Beekhuizen, Arman Naseri, David M. J. Tax, Ivo van der Bilt, Marcel J. T. Reinders:
Improving performance of heart rate time series classification by grouping subjects. CoRR abs/2311.13285 (2023) - 2022
- [j85]Daniele Bizzarri, Marcel J. T. Reinders, Marian Beekman, P. Eline Slagboom, Erik van den Akker:
MiMIR: R-shiny application to infer risk factors and endpoints from Nightingale Health's 1H-NMR metabolomics data. Bioinform. 38(15): 3847-3849 (2022) - [j84]Marc P. Maurits, Ilya Korsunsky, Soumya Raychaudhuri, Shawn N. Murphy, Jordan W. Smoller, Scott T. Weiss, Thomas W. J. Huizinga, Marcel J. T. Reinders, Elizabeth W. Karlson, Erik van den Akker, Rachel Knevel:
A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history. J. Am. Medical Informatics Assoc. 29(5): 761-769 (2022) - [i3]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
Self-Supervised PPG Representation Learning Shows High Inter-Subject Variability. CoRR abs/2212.04902 (2022) - 2021
- [j83]Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel M. Gomez, Victoria E. Sánchez, Marcel J. T. Reinders:
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function. Bioinform. 37(2): 162-170 (2021) - [j82]Niccolo Tesi, Sven van der Lee, Marc Hulsman, Henne Holstege, Marcel J. T. Reinders:
snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets. Nucleic Acids Res. 49(Webserver-Issue): 603-612 (2021) - 2020
- [j81]Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham:
Metric learning on expression data for gene function prediction. Bioinform. 36(4): 1182-1190 (2020) - [j80]Martijn Cordes, Karin Pike-Overzet, Marja van Eggermond, Sandra Vloemans, Miranda R. Baert, Laura Garcia-Perez, Frank J. T. Staal, Marcel J. T. Reinders, Erik van den Akker:
ImSpectR: R package to quantify immune repertoire diversity in spectratype and repertoire sequencing data. Bioinform. 36(6): 1930-1932 (2020) - [c65]Chibuike Ugwuoke, Zekeriya Erkin, Marcel J. T. Reinders, Reginald L. Lagendijk:
PREDICT: Efficient Private Disease Susceptibility Testing in Direct-to-Consumer Model. CODASPY 2020: 329-340
2010 – 2019
- 2019
- [j79]Celia W. G. van Gelder, Rob W. W. Hooft, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa:
Bioinformatics in the Netherlands: the value of a nationwide community. Briefings Bioinform. 20(2): 540-550 (2019) - [j78]Stavros Makrodimitris, Roeland C. H. J. van Ham, Marcel J. T. Reinders:
Improving protein function prediction using protein sequence and GO-term similarities. Bioinform. 35(7): 1116-1124 (2019) - [j77]Soufiane Mourragui, Marco Loog, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
PRECISE: a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors. Bioinform. 35(14): i510-i519 (2019) - [j76]Tamim Abdelaal, Thomas Höllt, Vincent van Unen, Boudewijn P. F. Lelieveldt, Frits Koning, Marcel J. T. Reinders, Ahmed Mahfouz:
CyTOFmerge: integrating mass cytometry data across multiple panels. Bioinform. 35(20): 4063-4071 (2019) - [i2]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [j75]Celia W. G. van Gelder, Rob W. W. Hooft, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa:
Bioinformatics in the Netherlands: the value of a nationwide community. Briefings Bioinform. 19(2): 359 (2018) - [j74]Sjoerd M. H. Huisman, Ahmed Mahfouz, Nematollah Kayhan Batmanghelich, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders:
A structural equation model for imaging genetics using spatial transcriptomics. Brain Informatics 5(2) (2018) - 2017
- [j73]Dana S. Poole, Nathalie Doorenweerd, Jaap J. Plomp, Ahmed Mahfouz, Marcel J. T. Reinders, Louise van der Weerd:
Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies. NeuroImage 147: 1-9 (2017) - 2016
- [j72]Jaap Heringa, Marcel J. T. Reinders, Sanne Abeln, Jeroen de Ridder:
ECCB 2016: The 15th European Conference on Computational Biology. Bioinform. 32(17): 389-392 (2016) - 2015
- [j71]Thies Gehrmann, Marcel J. T. Reinders:
Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level. Bioinform. 31(21): 3437-3444 (2015) - [j70]Erdogan Taskesen, Frank J. T. Staal, Marcel J. T. Reinders:
An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in Acute Myeloid Leukemia. BMC Bioinform. 16(S-4): S4 (2015) - [j69]Erdogan Taskesen, Sepideh Babaei, Marcel J. T. Reinders, Jeroen de Ridder:
Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia. BMC Bioinform. 16(S-4): S5 (2015) - [j68]Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P. F. Lelieveldt, Jeroen de Ridder, Marcel J. T. Reinders:
Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex. PLoS Comput. Biol. 11(5) (2015) - [j67]Alexey A. Gritsenko, Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder:
Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data. PLoS Comput. Biol. 11(8) (2015) - 2014
- [j66]Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder:
SPiCE: a web-based tool for sequence-based protein classification and exploration. BMC Bioinform. 15: 93 (2014) - [c64]David M. J. Tax, Herman M. J. Sontrop, Marcel J. T. Reinders, Perry D. Moerland:
The Effect of Aggregating Subtype Performances Depends Strongly on the Performance Measure Used. ICPR 2014: 3720-3725 - [c63]Ahmed Mahfouz, Mark N. Ziats, Owen M. Rennert, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders:
Genomic connectivity networks based on the BrainSpan atlas of the developing human brain. Medical Imaging: Image Processing 2014: 90344G - 2013
- [j65]Dick de Ridder, Jeroen de Ridder, Marcel J. T. Reinders:
Pattern recognition in bioinformatics. Briefings Bioinform. 14(5): 633-647 (2013) - [j64]Jurgen F. Nijkamp, Mihai Pop, Marcel J. T. Reinders, Dick de Ridder:
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinform. 29(22): 2826-2834 (2013) - [j63]Sepideh Babaei, Marc Hulsman, Marcel J. T. Reinders, Jeroen de Ridder:
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion. BMC Bioinform. 14: 29 (2013) - [j62]Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Topology of molecular interaction networks. BMC Syst. Biol. 7: 90 (2013) - [j61]Rogier J. P. van Berlo, Wynand Winterbach, Marco J. L. de Groot, Andreas Bender, Peter J. T. Verheijen, Marcel J. T. Reinders, Dick de Ridder:
Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels. Int. J. Bioinform. Res. Appl. 9(4): 407-432 (2013) - [c62]Marc Hulsman, Jan Bot, Arjen P. de Vries, Marcel J. T. Reinders:
Ibidas: Querying Flexible Data Structures to Explore Heterogeneous Bioinformatics Data. DILS 2013: 23-37 - [c61]Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Local Topological Signatures for Network-Based Prediction of Biological Function. PRIB 2013: 23-34 - [c60]Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Mutational Genomics for Cancer Pathway Discovery. PRIB 2013: 35-46 - [c59]Alexey A. Gritsenko, Marcel J. T. Reinders, Dick de Ridder:
Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization. PRIB 2013: 159-171 - [c58]Thies Gehrmann, Marco Loog, Marcel J. T. Reinders, Dick de Ridder:
Conditional Random Fields for Protein Function Prediction. PRIB 2013: 184-195 - 2012
- [j60]Alexey A. Gritsenko, Jurgen F. Nijkamp, Marcel J. T. Reinders, Dick de Ridder:
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies. Bioinform. 28(11): 1429-1437 (2012) - [j59]Jurgen F. Nijkamp, Marcel van den Broek, Jan-Maarten A. Geertman, Marcel J. T. Reinders, Jean-Marc Daran, Dick de Ridder:
De novo detection of copy number variation by co-assembly. Bioinform. 28(24): 3195-3202 (2012) - [c57]Jan Bot, Migiel de Vos, Sander Boele, Marcel J. T. Reinders, Joost N. Kok:
Enabling large genomic data transfers using nation-wide and international dynamic lightpaths. eScience 2012: 1-2 - 2011
- [j58]Jan Bot, Marcel J. T. Reinders:
CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages. Bioinform. 27(17): 2451-2452 (2011) - [j57]Erik van den Akker, Bas Verbruggen, Bas T. Heijmans, Marian Beekman, Joost N. Kok, Pieternella E. Slagboom, Marcel J. T. Reinders:
Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis. J. Integr. Bioinform. 8(2) (2011) - [j56]Wynand Winterbach, Huijuan Wang, Marcel J. T. Reinders, Piet Van Mieghem, Dick de Ridder:
Metabolic network destruction: Relating topology to robustness. Nano Commun. Networks 2(2-3): 88-98 (2011) - [j55]Gineke A. ten Holt, Andrea J. van Doorn, Marcel J. T. Reinders, Emile A. Hendriks, Huib de Ridder:
Human-inspired search for redundancy in automatic sign language recognition. ACM Trans. Appl. Percept. 8(2): 15:1-15:15 (2011) - [j54]Rogier J. P. van Berlo, Dick de Ridder, Jean-Marc Daran, Pascale A. S. Daran-Lapujade, Bas Teusink, Marcel J. T. Reinders:
Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 206-216 (2011) - [c56]Sepideh Babaei, Erik van den Akker, Jeroen de Ridder, Marcel J. T. Reinders:
Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis. PRIB 2011: 247-259 - [e1]Marco Loog, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Dick de Ridder:
Pattern Recognition in Bioinformatics - 6th IAPR International Conference, PRIB 2011, Delft, The Netherlands, November 2-4, 2011. Proceedings. Lecture Notes in Computer Science 7036, Springer 2011, ISBN 978-3-642-24854-2 [contents] - [i1]Maarten Clements, Pavel Serdyukov, Arjen P. de Vries, Marcel J. T. Reinders:
Personalised Travel Recommendation based on Location Co-occurrence. CoRR abs/1106.5213 (2011) - 2010
- [j53]Jeroen de Ridder, Alice Gerrits, Jan Bot, Gerald de Haan, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Inferring combinatorial association logic networks in multimodal genome-wide screens. Bioinform. 26(12): 149-157 (2010) - [j52]Jurgen F. Nijkamp, Wynand Winterbach, Marcel van den Broek, Jean-Marc Daran, Marcel J. T. Reinders, Dick de Ridder:
Integrating genome assemblies with MAIA. Bioinform. 26(18) (2010) - [j51]Marc Hulsman, Anouk Mentink, Eugene P. van Someren, Koen J. Dechering, Jan de Boer, Marcel J. T. Reinders:
Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization. BMC Bioinform. 11: 156 (2010) - [j50]Erdogan Taskesen, Renee Beekman, Jeroen de Ridder, Bas J. Wouters, Justine K. Peeters, Ivo P. Touw, Marcel J. T. Reinders, Ruud Delwel:
HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data. BMC Bioinform. 11: 275 (2010) - [j49]Jun Wang, Maarten Clements, Jie Yang, Arjen P. de Vries, Marcel J. T. Reinders:
Personalization of tagging systems. Inf. Process. Manag. 46(1): 58-70 (2010) - [j48]Maarten Clements, Arjen P. de Vries, Marcel J. T. Reinders:
The influence of personalization on tag query length in social media search. Inf. Process. Manag. 46(4): 403-412 (2010) - [j47]Christiaan Klijn, Jan Bot, David J. Adams, Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jos Jonkers:
Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach. PLoS Comput. Biol. 6(1) (2010) - [j46]Maarten Clements, Arjen P. de Vries, Marcel J. T. Reinders:
The task-dependent effect of tags and ratings on social media access. ACM Trans. Inf. Syst. 28(4): 21:1-21:42 (2010) - [c55]Maarten Clements, Pavel Serdyukov, Arjen P. de Vries, Marcel J. T. Reinders:
Finding Wormholes with Flickr Geotags. ECIR 2010: 658-661 - [c54]Herman M. J. Sontrop, Wim F. J. Verhaegh, René van den Ham, Marcel J. T. Reinders, Perry D. Moerland:
Subtype specific breast cancer event prediction. GENSiPS 2010: 1-4 - [c53]Bastiaan A. van den Berg, Jurgen F. Nijkamp, Marcel J. T. Reinders, Liang Wu, Herman J. Pel, Johannes A. Roubos, Dick de Ridder:
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger. PRIB 2010: 3-14 - [c52]Maarten Clements, Pavel Serdyukov, Arjen P. de Vries, Marcel J. T. Reinders:
Using flickr geotags to predict user travel behaviour. SIGIR 2010: 851-852
2000 – 2009
- 2009
- [j45]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich:
Fewer permutations, more accurate P-values. Bioinform. 25(12) (2009) - [j44]Marco J. L. de Groot, Rogier J. P. van Berlo, Wouter A. van Winden, Peter J. T. Verheijen, Marcel J. T. Reinders, Dick de Ridder:
Metabolite and reaction inference based on enzyme specificities. Bioinform. 25(22): 2975-2982 (2009) - [j43]Wouter Meuleman, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Analysis of mass spectrometry data using sub-spectra. BMC Bioinform. 10(S-1) (2009) - [j42]Herman M. J. Sontrop, Perry D. Moerland, René van den Ham, Marcel J. T. Reinders, Wim F. J. Verhaegh:
A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability. BMC Bioinform. 10: 389 (2009) - [j41]Martin H. van Vliet, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Knowledge driven decomposition of tumor expression profiles. BMC Bioinform. 10(S-1) (2009) - [j40]Peter van Nes, Domenico Bellomo, Marcel J. T. Reinders, Dick de Ridder:
Stability from Structure: Metabolic Networks Are Unlike Other Biological Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - [j39]Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder:
Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 427-437 (2009) - [c51]Herman M. J. Sontrop, René van den Ham, Perry D. Moerland, Marcel J. T. Reinders, Wim F. J. Verhaegh:
A sensitivity analysis of microarray feature selection and classification under measurement noise. GENSiPS 2009: 1-4 - [c50]Gineke A. ten Holt, Marcel J. T. Reinders, Emile A. Hendriks, Huib de Ridder, Andrea J. van Doorn:
Influence of Handshape Information on Automatic Sign Language Recognition. Gesture Workshop 2009: 301-312 - [c49]Gineke A. ten Holt, Jeroen Arendsen, Huib de Ridder, Andrea J. Koenderink-van Doorn, Marcel J. T. Reinders, Emile A. Hendriks:
Sign language perception research for improving automatic sign language recognition. Human Vision and Electronic Imaging 2009: 72400 - [c48]Martin Wildeman, Martin Baiker, Johan H. C. Reiber, Clemens W. G. M. Löwik, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt:
2D/3D Registration of Micro-CT Data to Multi-View Photographs Based on a 3D Distance Map. ISBI 2009: 987-990 - [c47]Maarten Clements, Arjen P. de Vries, Marcel J. T. Reinders:
Exploiting Positive and Negative Graded Relevance Assessments for Content Recommendation. WAW 2009: 155-166 - [p1]Jun Wang, Johan Pouwelse, Jenneke Fokker, Arjen P. de Vries, Marcel J. T. Reinders:
Personalization on a Peer-to-Peer Television System. Handbook of Multimedia for Digital Entertainment and Arts 2009: 91-113 - 2008
- [j38]Wouter Meuleman, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Jos H. Beijnen, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data. BMC Bioinform. 9 (2008) - [j37]Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic pathway alignment between species using a comprehensive and flexible similarity measure. BMC Syst. Biol. 2: 111 (2008) - [j36]Johan A. Pouwelse, Pawel Garbacki, Jun Wang, Arno Bakker, Jie Yang, Alexandru Iosup, Dick H. J. Epema, Marcel J. T. Reinders, Maarten van Steen, Henk J. Sips:
TRIBLER: a social-based peer-to-peer system. Concurr. Comput. Pract. Exp. 20(2): 127-138 (2008) - [j35]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Creating gene set activity profiles with time-series expression data. Int. J. Bioinform. Res. Appl. 4(3): 306-323 (2008) - [j34]Jun Wang, Stephen Robertson, Arjen P. de Vries, Marcel J. T. Reinders:
Probabilistic relevance ranking for collaborative filtering. Inf. Retr. 11(6): 477-497 (2008) - [j33]Jun Wang, Johan A. Pouwelse, Jenneke Fokker, Arjen P. de Vries, Marcel J. T. Reinders:
Personalization on a peer-to-peer television system. Multim. Tools Appl. 36(1-2): 89-113 (2008) - [j32]Jeroen Lichtenauer, Emile A. Hendriks, Marcel J. T. Reinders:
Sign Language Recognition by Combining Statistical DTW and Independent Classification. IEEE Trans. Pattern Anal. Mach. Intell. 30(11): 2040-2046 (2008) - [j31]Yunlei Li, Dick de Ridder, Robert P. W. Duin, Marcel J. T. Reinders:
Integration of prior knowledge of measurement noise in kernel density classification. Pattern Recognit. 41(1): 320-330 (2008) - [j30]Yunlei Li, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Erratum to "Classification in the presence of class noise using a probabilistic kernel fisher method": [Pattern Recognition 40 (12) 3349-3357]. Pattern Recognit. 41(3): 1214 (2008) - [j29]Jun Wang, Arjen P. de Vries, Marcel J. T. Reinders:
Unified relevance models for rating prediction in collaborative filtering. ACM Trans. Inf. Syst. 26(3): 16:1-16:42 (2008) - [c46]Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks. APBC 2008: 273-286 - [c45]Domenico Bellomo, Peter van Nes, Marcel J. T. Reinders, Dick de Ridder:
Stability cannot be derived from local structure in biochemical networks. BIONETICS 2008: 3 - [c44]Jeroen Lichtenauer, Gineke A. ten Holt, Emile A. Hendriks, Marcel J. T. Reinders, Abbie Vanhoutte, Irene Kamp, Jeroen Arendsen, Ans J. van Doorn, Huib de Ridder, Elmar Wenners, Mariëlle Elzenaar, Gerard Spaai, Connie Fortgens, Marjan Bruins:
A learning environment for sign language. FG 2008: 1-2 - [c43]Jeroen Lichtenauer, Emile A. Hendriks, Marcel J. T. Reinders:
Learning to recognize a sign from a single example. FG 2008: 1-6 - [c42]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Combinatorial influence of environmental parameters on transcription factor activity. ISMB 2008: 172-181 - [c41]Maarten Clements, Arjen P. de Vries, Marcel J. T. Reinders:
Detecting synonyms in social tagging systems to improve content retrieval. SIGIR 2008: 739-740 - [r1]Arjen P. de Vries, Marcel J. T. Reinders, Jun Wang:
Wi-Fi Walkman. Encyclopedia of Wireless and Mobile Communications 2008 - 2007
- [j28]Carmen Lai, Hugo M. Horlings, Marc J. van de Vijver, Eric H. van Beers, Petra M. Nederlof, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets. BMC Bioinform. 8 (2007) - [j27]Maarten Clements, Eugene P. van Someren, Theo A. Knijnenburg, Marcel J. T. Reinders:
Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation. Genom. Proteom. Bioinform. 5(2): 86-101 (2007) - [j26]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Protein Complex Prediction Using an Integrative Bioinformatics Approach. J. Bioinform. Comput. Biol. 5(4): 839-864 (2007) - [j25]Yunlei Li, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Classification in the presence of class noise using a probabilistic Kernel Fisher method. Pattern Recognit. 40(12): 3349-3357 (2007) - [c40]Jeroen Lichtenauer, Gineke A. ten Holt, Emile A. Hendriks, Marcel J. T. Reinders:
Sign language detection using 3D visual cues. AVSS 2007: 435-440 - [c39]Jeroen Lichtenauer, Gineke A. ten Holt, Marcel J. T. Reinders, Emile A. Hendriks:
Person-Independent 3D Sign Language Recognition. Gesture Workshop 2007: 69-80 - [c38]Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes. ISMB/ECCB (Supplement of Bioinformatics) 2007: 133-141 - [c37]Jeroen Lichtenauer, Marcel J. T. Reinders, Emile A. Hendriks:
A self-calibrating chrominance model applied to skin color detection. VISAPP (1) 2007: 115-120 - 2006
- [j24]Dick de Ridder, Frank J. T. Staal, Jacques J. M. van Dongen, Marcel J. T. Reinders:
Maximum significance clustering of oligonucleotide microarrays. Bioinform. 22(3): 326-331 (2006) - [j23]Eugene P. van Someren, B. L. T. Vaes, W. T. Steegenga, Anneke M. Sijbers, Koen J. Dechering, Marcel J. T. Reinders:
Least absolute regression network analysis of the murine osteoblast differentiation network. Bioinform. 22(4): 477-484 (2006) - [j22]Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M. Valk, Bob Löwenberg, Marcel J. T. Reinders, Dick de Ridder:
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies. BMC Bioinform. 7: 105 (2006) - [j21]Carmen Lai, Marcel J. T. Reinders, Laura J. van't Veer, Lodewyk F. A. Wessels:
A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets. BMC Bioinform. 7: 235 (2006) - [j20]Jeroen de Ridder, Anthony Uren, Jaap Kool, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens. PLoS Comput. Biol. 2(12) (2006) - [j19]Theo A. Knijnenburg, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Artifacts of Markov blanket filtering based on discretized features in small sample size applications. Pattern Recognit. Lett. 27(7): 709-714 (2006) - [j18]Carmen Lai, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Random subspace method for multivariate feature selection. Pattern Recognit. Lett. 27(10): 1067-1076 (2006) - [c36]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Condition Transition Analysis Reveals TF Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast. CMSB 2006: 271-284 - [c35]Jun Wang, Arjen P. de Vries, Marcel J. T. Reinders:
A User-Item Relevance Model for Log-Based Collaborative Filtering. ECIR 2006: 37-48 - [c34]Johan A. Pouwelse, Pawel Garbacki, Jun Wang, Arno Bakker, Jie Yang, Alexandru Iosup, Dick H. J. Epema, Marcel J. T. Reinders, Maarten van Steen, Henk J. Sips:
Tribler: A Social-Based Peer-to-Peer System. IPTPS 2006 - [c33]Jun Wang, Johan A. Pouwelse, Reginald L. Lagendijk, Marcel J. T. Reinders:
Distributed collaborative filtering for peer-to-peer file sharing systems. SAC 2006: 1026-1030 - [c32]Jun Wang, Arjen P. de Vries, Marcel J. T. Reinders:
Unifying user-based and item-based collaborative filtering approaches by similarity fusion. SIGIR 2006: 501-508 - 2005
- [j17]Lodewyk F. A. Wessels, Marcel J. T. Reinders, Augustinus A. M. Hart, Cor J. Veenman, Hongyue Dai, Yudong D. He, Laura J. van't Veer:
A protocol for building and evaluating predictors of disease state based on microarray data. Bioinform. 21(19): 3755-3762 (2005) - [j16]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Constrained Texture Restoration. EURASIP J. Adv. Signal Process. 2005(17): 2758-2771 (2005) - [j15]Cor J. Veenman, Marcel J. T. Reinders:
The Nearest Subclass Classifier: A Compromise between the Nearest Mean and Nearest Neighbor Classifier. IEEE Trans. Pattern Anal. Mach. Intell. 27(9): 1417-1429 (2005) - [j14]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Edge-Based Image Restoration. IEEE Trans. Image Process. 14(10): 1454-1468 (2005) - [c31]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. D. C. Martes, Marcel J. T. Reinders:
Identifying Orthologs: Cycle Splitting on the Breakpoint Graph. CSB Workshops 2005: 65-68 - [c30]Theo A. Knijnenburg, Marcel J. T. Reinders, Jean-Marc Daran, Pascale A. S. Daran-Lapujade, Lodewyk F. A. Wessels:
Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae. CSB Workshops 2005: 71-72 - [c29]Dick de Ridder, Marcel J. T. Reinders, Frank J. T. Staal, Jacques J. M. van Dongen:
Maximum signi.cance clustering of oligonucleotide microarrays. CSB Workshops 2005: 93-94 - [c28]Carmen Lai, Marcel J. T. Reinders:
Multivariate gene selection: Does it help. CSB Workshops 2005: 99-100 - [c27]Eugene P. van Someren, Marcel J. T. Reinders:
Which normalization method is best? A platform-independent biologically inspired quantitative comparison of normalization methods. CSB Workshops 2005: 135-136 - [c26]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. D. C. Martes, Marcel J. T. Reinders:
Predicting gene function by combining expression and interaction data. CSB Workshops 2005: 166-167 - [c25]Eugene P. van Someren, B. L. T. Vaes, W. T. Steegenga, Anneke M. Sijbers, Koen J. Dechering, Marcel J. T. Reinders:
Unravelling the murine osteoblast differentiation pathway by network structure analysis using time-series microarray data. CSB Workshops 2005: 172-173 - [c24]Jeroen Lichtenauer, Emile A. Hendriks, Marcel J. T. Reinders:
Isophote Properties as Features for Object Detection. CVPR (2) 2005: 649-654 - [c23]Jun Wang, Marcel J. T. Reinders, Reginald L. Lagendijk, Johan A. Pouwelse:
Self-organizing distributed collaborative filtering. SIGIR 2005: 659-660 - 2004
- [c22]Jeroen Lichtenauer, Marcel J. T. Reinders, Emile A. Hendriks:
Influence of The Observation Likelihood Function on Particle Filtering Performance in Tracking Applications. FGR 2004: 767-772 - [c21]Jun Wang, Marcel J. T. Reinders, Reginald L. Lagendijk, Jasper Lindenberg, Mohan S. Kankanhalli:
Video content representation on tiny devices. ICME 2004: 1711-1714 - [c20]Dick de Ridder, Marco Loog, Marcel J. T. Reinders:
Local Fisher Embedding. ICPR (2) 2004: 295-298 - 2003
- [j13]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Establishing motion correspondence using extended temporal scope. Artif. Intell. 145(1-2): 227-243 (2003) - [j12]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Motion tracking as a constrained optimization problem. Pattern Recognit. 36(9): 2049-2067 (2003) - [j11]Eugene P. van Someren, Lodewyk F. A. Wessels, Eric Backer, Marcel J. T. Reinders:
Multi-criterion optimization for genetic network modeling. Signal Process. 83(4): 763-775 (2003) - [j10]Rogier J. P. van Berlo, Eugene P. van Someren, Marcel J. T. Reinders:
Studying the Conditions for Learning Dynamic Bayesian Networks to Discover Genetic Regulatory Networks. Simul. 79(12): 689-702 (2003) - [j9]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
A cellular coevolutionary algorithm for image segmentation. IEEE Trans. Image Process. 12(3): 304-316 (2003) - [c19]Wei Qi Yan, Mohan S. Kankanhalli, Jun Wang, Marcel J. T. Reinders:
Experiential sampling for monitoring. ETP@MM 2003: 70-72 - 2002
- [j8]Jasper P. Janssen, Michael Egmont-Petersen, Emile A. Hendriks, Marcel J. T. Reinders, Rob J. van der Geest, P. C. W. Hogendoorn, Johan H. C. Reiber:
Scale-invariant segmentation of dynamic contrast-enhanced perfusion MR images with inherent scale selection. Comput. Animat. Virtual Worlds 13(1): 1-19 (2002) - [j7]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
A Maximum Variance Cluster Algorithm. IEEE Trans. Pattern Anal. Mach. Intell. 24(9): 1273-1280 (2002) - [c18]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Restoration of films affected by partial color artefacts. EUSIPCO 2002: 1-4 - [c17]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Image sequence restoration in the presence of pathological motion and severe artifacts. ICASSP 2002: 3365-3368 - [c16]Andrei Rares, Marcel J. T. Reinders, Reginald L. Lagendijk, Jan Biemond:
A spatiotemporal image sequence restoration algorithm. ICIP (2) 2002: 857-860 - 2001
- [j6]J. P. De Knecht, John G. M. Schavemaker, Marcel J. T. Reinders, Albert M. Vossepoel:
Utility map reconstruction. Int. J. Geogr. Inf. Sci. 15(1): 7-26 (2001) - [j5]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Resolving Motion Correspondence for Densely Moving Points. IEEE Trans. Pattern Anal. Mach. Intell. 23(1): 54-72 (2001) - [c15]Resmana Lim, Marcel J. T. Reinders:
Facial Landmarks Localization Based on Fuzzy and Gabor Wavelet Graph Matching. FUZZ-IEEE 2001: 683-686 - [c14]Jan C. A. van der Lubbe, Eugene P. van Someren, Marcel J. T. Reinders:
Dating and Authentication of Rembrandt's Etchings with the Help of Computational Intelligence. ICHIM (1) 2001: 485-492 - [c13]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Complex event classification in degraded image sequences. ICIP (1) 2001: 253-256 - [c12]Lodewyk F. A. Wessels, Eugene P. van Someren, Marcel J. T. Reinders:
A Comparison of Genetic Network Models. Pacific Symposium on Biocomputing 2001: 508-519 - [c11]Peter J. van der Veen, Lodewyk F. A. Wessels, J. W. Slootstra, R. H. Meloen, Marcel J. T. Reinders, Johannes Hellendoorn:
Determination of Binding Amino Acids Based on Random Peptide Array Screening Data. WABI 2001: 264-277 - 2000
- [j4]John G. M. Schavemaker, Marcel J. T. Reinders, Jan J. Gerbrands, Eric Backer:
Image sharpening by morphological filtering. Pattern Recognit. 33(6): 997-1012 (2000) - [j3]P. J. H. Bronkorsta, Marcel J. T. Reinders, Emile A. Hendriks, J. Grimbergen, Rob M. Heethaar, G. J. Brakenhoff:
On-line detection of red blood cell shape using deformable templates. Pattern Recognit. Lett. 21(5): 413-424 (2000) - [c10]Andrei Rares, Marcel J. T. Reinders:
Object Tracking by Adaptive Modeling. ICIP 2000: 74-77 - [c9]Bang Jun Lei, Emile A. Hendriks, Marcel J. T. Reinders:
Detecting Generic Low-Level Features in Images. ICPR 2000: 3979-3982 - [c8]Ilse Ravyse, Hichem Sahli, Jan Cornelis, Marcel J. T. Reinders:
Eye Activity Detection and Recognition Using Morphological Scale-Space Decomposition. ICPR 2000: 5080-5083 - [c7]Eugene P. van Someren, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Linear Modeling of Genetic Networks from Experimental Data. ISMB 2000: 355-366 - [c6]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Competitive Segmentation: A Struggle for Image Space. PPSN 2000: 517-526
1990 – 1999
- 1999
- [j2]Lodewyk F. A. Wessels, Eugene P. van Someren, Marcel J. T. Reinders:
Information processing for intelligent molecular diagnosis. Pattern Recognit. Lett. 20(11-13): 1457-1465 (1999) - 1998
- [c5]Cor J. Veenman, Emile A. Hendriks, Marcel J. T. Reinders:
A Fast and Robust Point Tracking Algorithm. ICIP (3) 1998: 653-657 - 1997
- [c4]John G. M. Schavemaker, Marcel J. T. Reinders:
Information Fusion for Conflict Resolution in Map Interpretation. GREC 1997: 231-242 - 1996
- [c3]Marcel J. T. Reinders, R. W. C. Koch, Jan J. Gerbrands:
Locating Facial Features in Image Sequences using Neural Networks. FG 1996: 230-235 - 1995
- [j1]Marcel J. T. Reinders, P. J. L. van Beek, Bülent Sankur, Jan C. A. van der Lubbe:
Facial feature localization and adaptation of a generic face model for model-based coding. Signal Process. Image Commun. 7(1): 57-74 (1995) - 1993
- [c2]Marcel J. T. Reinders, F. A. Odijk, Jan C. A. van der Lubbe, Jan J. Gerbrands:
Tracking of global motion and facial expressions of a human face in image sequences. VCIP 1993 - 1992
- [c1]Marcel J. T. Reinders, Bülent Sankur, Jan C. A. van der Lubbe:
Transformation of a general 3D facial model to an actual scene face. ICPR (3) 1992: 75-78
Coauthor Index
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