default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDFrontiers in Bioinformatics, Volume 4
Volume 4, 2024
- Shubham Choudhury
, Nisha Bajiya, Sumeet Patiyal, Gajendra P. S. Raghava:
MRSLpred - a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale. - Marin Truchi, Caroline Lacoux, Cyprien Gille, Julien Fassy, Virginie Magnone, Rafael Lopes Goncalves, Cédric Girard Riboulleau, Iris Manosalva-Pena, Marine Gautier-Isola, Kevin Lebrigand, Pascal Barbry, Salvatore Spicuglia, Georges Vassaux, Roger Rezzonico, Michel Barlaud, Bernard Mari:
Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network. - Samuel D. Chorlton:
Ten common issues with reference sequence databases and how to mitigate them. - Shamini Hemandhar Kumar, Ines Tapken, Daniela Kuhn, Peter Claus, Klaus Jung:
bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses. - Alexander G. Lucaci, William E. Brew, Jason Lamanna, Avery Selberg, Vincenzo Carnevale, Anna R. Moore, Sergei L. Kosakovsky Pond:
The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders. - Xihaier Luo, Seyednami Niyakan, Patrick R. Johnstone, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Shantenu Jha, Byung-Jun Yoon:
Pathway-based analyses of gene expression profiles at low doses of ionizing radiation. - Neta Zadok, Gil Ast, Roded Sharan:
A network-based method for associating genes with autism spectrum disorder. - Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier, Riccardo Pellarin:
AlignScape, displaying sequence similarity using self-organizing maps. - Lajoyce Mboning, Liudmilla Rubbi, Michael Thompson, Louis-S. Bouchard, Matteo Pellegrini:
BayesAge: A maximum likelihood algorithm to predict epigenetic age. - Rang Li, Sabrina Wilderotter, Madison Stoddard, Debra Van Egeren, Arijit Chakravarty, Diane Joseph-McCarthy:
Computational identification of antibody-binding epitopes from mimotope datasets. - Brona Brejová, Travis Gagie, Eva Herencsárová, Tomás Vinar:
Maximum-scoring path sets on pangenome graphs of constant treewidth. - Ruofan Cao, Yide Zhang, Jessica Houston:
Editorial: Phasor analysis for fluorescence lifetime data. - Kai O. Kreissner, Benjamin Faller, Ivan Talucci, Hans M. Maric:
MARTin - an open-source platform for microarray analysis. - Aimer Gutierrez-Diaz, Steve Hoffmann, Juan Carlos Gallego-Gómez, Clara Bermudez-Santana:
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells. - Fengyuan Huang, Robert S. Welner, Jake Y. Chen, Zongliang Yue:
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis. - Michaël Vacher, Rodrigo Cánovas, Simon M. Laws, James D. Doecke:
A comprehensive multi-omics analysis reveals unique signatures to predict Alzheimer's disease. - Michael S. Rosenberg:
MetaWin 3: open-source software for meta-analysis. - Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz:
Predicting cell population-specific gene expression from genomic sequence. - Kevan Baker, Nathaniel Hughes, Sutanu Bhattacharya:
An interactive visualization tool for educational outreach in protein contact map overlap analysis. - Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational methods for analysis of DNA methylation data, volume II. - Jannes Peeters, Daniël M. Bot, Gustavo Alberto Rovelo Ruiz, Jan Aerts:
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs. - A. L. Swan, A. Broadbent, Prakash Singh Gaur, A. Mishra, Kim T. Gurwitz, A. Mithani, Sarah L. Morgan, G. Malhotra, Catherine Brooksbank:
Making bioinformatics training FAIR: the EMBL-EBI training portal. - Hayet Belghit, Mariano Spivak, Manuel Dauchez, Marc Baaden, Jessica Prévoteau-Jonquet:
From complex data to clear insights: visualizing molecular dynamics trajectories. - Gennaro Calendo, Dara Kusic, Jozef Madzo, Neda Gharani, Laura Scheinfeldt:
ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data. - Sarah von Löhneysen, Mario Mörl, Peter F. Stadler:
Limits of experimental evidence in RNA secondary structure prediction. - Michael Olbrich, Lennart Bartels, Inken Wohlers:
Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research. - Joshua Zhang, Mary E. Sehl, Roger Shih, Elizabeth Crabb Breen, Fengxue Li, Ake T. Lu, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Steve Horvath, Beth D. Jamieson:
Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV. - Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Ìtalo Faria do Valle, Maria Giulia Bacalini, Daniele Dall'Olio, Claudio Franceschi, Gastone C. Castellani, Paolo Garagnani, Christine Nardini:
Where are we in the implementation of tissue-specific epigenetic clocks? - Wouter-Michiel A. M. Vierdag, Sinem K. Saka:
A perspective on FAIR quality control in multiplexed imaging data processing. - Alban Obel Slabowska, Charles Pyke, Henning Hvid, Leon Eyrich Jessen, Simon J. Baumgart, Vivek Das:
A systematic evaluation of state-of-the-art deconvolution methods in spatial transcriptomics: insights from cardiovascular disease and chronic kidney disease. - Ashraf Akintayo Akintola, Abdullahi Tunde Aborode, Muhammed Taofiq Hamza, Augustine Amakiri, Benjamin Moore, Suliat Abdulai, Oluyinka Ajibola Iyiola, Lateef Adegboyega Sulaimon, Effiong Effiong, Adedeji Ogunyemi, Boluwatife Dosunmu, Abdulkadir Yusif Maigoro, Opeyemi Lawal, Kayode Raheem, Ui Wook Hwang:
Bioinformatics proficiency among African students. - Phillip J. Tomezsko, Colby T. Ford, Avery E. Meyer, Adam M. Michaleas, Rafael Jaimes:
Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens. - Mary E. Sehl, Elizabeth Crabb Breen, Roger Shih, Fengxue Li, Joshua Zhang, Peter Langfelder, Steve Horvath, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Beth D. Jamieson:
Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV. - Trudy M. Wassenaar, Terry Harville, Jonathan Chastain, Visanu Wanchai, David Wayne Ussery:
DNA structural features and variability of complete MHC locus sequences. - Benjamin Dubois, Mathieu Delitte, Salomé Lengrand, Claude Bragard, Anne Legrève, Frédéric Debode:
PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences. - Shira L. Broschat, Shirley W. I. Siu, Cesar de la Fuente-Nunez:
Editorial: Machine learning approaches to antimicrobials: discovery and resistance. - David Barrios, Carlos Prieto:
Rvisdiff: An R package for interactive visualization of differential expression. - Deepasree K, Subhashree Venugopal:
Molecular docking and molecular dynamic simulation studies to identify potential terpenes against Internalin A protein of Listeria monocytogenes. - Juan Segura-Vega, Allan González-Herrera, Ramón Molina-Bravo, Stefany Solano-González:
Computational identification and characterization of chitinase 1 and chitinase 2 from neotropical isolates of Beauveria bassiana. - Stuart G. Jantzen, Gaël McGill, Jodie Jenkinson:
Design principles for molecular animation. - Austin Swart, Ron Caspi, Suzanne M. Paley, Peter D. Karp:
Visual analysis of multi-omics data. - Temitope A. Ogunnupebi, Gbolahan O. Oduselu, Oluwadunni F. Elebiju, Olayinka O. Ajani, Ezekiel F. Adebiyi:
In silico studies of benzothiazole derivatives as potential inhibitors of Anopheles funestus and Anopheles gambiae trehalase. - Victor A. Tagliacollo, Milton Tan, Roberto E. Reis, Ronielson Gaia, Virgilio Carrijo, Marcelo Ranuzi, Jack M. Craig, James S. Albert:
Time-calibrated phylogeny of neotropical freshwater fishes. - Jack M. Craig, S. Blair Hedges, Sudhir Kumar:
Completing a molecular timetree of primates. - Sumeet Patiyal, Palak Tiwari, Mohit Ghai, Aman Dhapola, Anjali Dhall, Gajendra P. S. Raghava:
A hybrid approach for predicting transcription factors. - Lia Obinu, Urmi Trivedi, Andrea Porceddu:
Benchmarking of Hi-C tools for scaffolding plant genomes obtained from PacBio HiFi and ONT reads. - Steven Weaver, Vanessa M. Dávila Conn, Daniel Ji, Hannah Verdonk, Santiago Ávila-Rios, Andrew J. Leigh Brown, Joel O. Wertheim, Sergei L. Kosakovsky Pond:
AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters. - Charlene Zhi Lin Ong, N. Jannah M. Nasir, Roy E. Welsch, Lisa Tucker-Kellogg, Jagath C. Rajapakse:
Quantification of muscle fiber malformations using edge detection to investigate chronic muscle pressure ulcers. - Catriona Miller, Theo Portlock, Denis M. Nyaga, Justin M. O'Sullivan:
A review of model evaluation metrics for machine learning in genetics and genomics. - Tim Muruvanda, Hugh Rand, James B. Pettengill, Arthur Pightling:
RIPS (rapid intuitive pathogen surveillance): a tool for surveillance of genome sequence data from foodborne bacterial pathogens. - Hermenegildo Taboada-Castro, Alfredo José Hernández-Álvarez, Juan Miguel Escorcia-Rodríguez, Julio Augusto Freyre-González, Edgardo Galán-Vásquez, Sergio Encarnación-Guevara:
Rhizobium etli CFN42 and Sinorhizobium meliloti 1021 bioinformatic transcriptional regulatory networks from culture and symbiosis. - Vineeta Pandey, Aarshi Srivastava, Ramwant Gupta, Haitham E. M. Zaki, Muhammad Shafiq Shahid, Rajarshi K. Gaur:
In silico identification of chilli genome encoded MicroRNAs targeting the 16S rRNA and secA genes of "Candidatus phytoplasma trifolii". - Yuet Ruh Dan, Keng-Hwee Chiam:
Discovery of plasma biomarkers related to blood-brain barrier dysregulation in Alzheimer's disease. - Ruslan Kalendar, Alexandr Shevtsov, Zhenis Otarbay, Aisulu Ismailova:
In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays. - H. W. Cayatineto, S. T. Hakim:
hsa-miR-548d-3p: a potential microRNA to target nucleocapsid and/or capsid genes in multiple members of the Flaviviridae family. - Dapeng Wang, Giuseppe Agapito:
Editorial: Multi-omics approaches in the study of human disease mechanisms. - Ruyan Song, Xueli Zhang, Zhuo Zhang, Chan Zhou:
Climatic factors, but not geographic distance, promote genetic structure and differentiation of Cleistogenes squarrosa (Trin.) Keng populations. - Gustavo Becerra-Gaviño, Liliana Ibeth Barbosa-Santillán:
The quantum hypercube as a k-mer graph. - Ziru Huang, Samarappuli Mudiyanselage Savini Gunarathne, Wenwen Liu, Yuwei Zhou, Yuqing Jiang, Shiqi Li, Jian Huang:
PhIP-Seq: methods, applications and challenges. - Benson R. Kidenya, Gerald Mboowa:
Unlocking the future of complex human diseases prediction: multi-omics risk score breakthrough. - Huixiao Hong, Inimary Toby-Ogundeji, Robert J. Doerksen, Zhaohui Steve Qin:
Editorial: Big data and artificial intelligence for genomics and therapeutics - Proceedings of the 19th Annual Meeting of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). - Gabriel David, Emmanuel Faure:
End-to-end 3D instance segmentation of synthetic data and embryo microscopy images with a 3D Mask R-CNN. - Anas Al-Okaily, AbdelGhani Tbakhi:
A novel lossless encoding algorithm for data compression-genomics data as an exemplar. - Jeremias Schebera, Dirk Zeckzer, Daniel Wiegreffe:
A layout framework for genome-wide multiple sequence alignment graphs. - Júlio C. M. Chaves, Fábio Hepp, Carlos G. Schrago, Beatriz Mello:
A time-calibrated phylogeny of the diversification of Holoadeninae frogs. - Wang Wenlun, Yu Chaohang, Huang Yan, Li Wenbin, Zhou Nanqing, Hu Qianmin, Wu Shengcai, Yuan Qing, Yu Shirui, Zhang Feng, Zhu Lingyun:
Developing a ceRNA-based lncRNA-miRNA-mRNA regulatory network to uncover roles in skeletal muscle development. - Jagadeeswara Reddy Devasani, Girijasankar Guntuku, Nalini Panatula, Murali Krishna Kumar Muthyala, Mary Sulakshana Palla, Teruna J. Siahaan:
Innovative CDR grafting and computational methods for PD-1 specific nanobody design. - Shruti S. Patil, Steven A. Roberts, Assefaw H. Gebremedhin:
Network analysis of driver genes in human cancers. - Buzhong Zhang, Meili Zheng, Yuzhou Zhang, Lijun Quan:
DCMA: faster protein backbone dihedral angle prediction using a dilated convolutional attention-based neural network. - Irma Martínez-Flores, Constanza Cárdenas Carvajal, Viviana Monje-Galvan:
Editorial: Women in bioinformatics. - Abdullahi Tunde Aborode, Neeraj Kumar, Christopher Busayo Olowosoke, Tope Abraham Ibisanmi, Islamiyyah Ayoade, Haruna Isiyaku Umar, Abdullahi Temitope Jamiu, Basit Bolarinwa, Zainab Olapade, Abidemi Ruth Idowu, Ibrahim O. Adelakun, Isreal Ayobami Onifade, Benjamin Akangbe, Modesta Abacheng, Odion O. Ikhimiukor, Aeshah A. Awaji, Ridwan Olamilekan Adesola:
Predictive identification and design of potent inhibitors targeting resistance-inducing candidate genes from E. coli whole-genome sequences. - Gabriel J. Selzer, Curtis T. Rueden, Mark C. Hiner, Edward L. Evans, David Kolb, Marcel Wiedenmann, Christian Birkhold, Tim-Oliver Buchholz, Stefan Helfrich, Brian Northan, Alison E. Walter, Johannes E. Schindelin, Tobias Pietzsch, Stephan Saalfeld, Michael R. Berthold, Kevin W. Eliceiri:
SciJava Ops: an improved algorithms framework for Fiji and beyond. - Jiquan Shen, Xuanhui Guo, Hanwen Bai, Junwei Luo:
CAEM-GBDT: a cancer subtype identifying method using multi-omics data and convolutional autoencoder network. - Aram Safrastyan, Damian Wollny:
Detection of reproducible liver cancer specific ligand-receptor signaling in blood. - Narjes Noori Goodarzi, Mahshid Khazani Asforooshani, Behzad Shahbazi, Nayereh Rezaie Rahimi, Farzad Badmasti:
Identification of novel drug targets for Helicobacter pylori: structure-based virtual screening of potential inhibitors against DAH7PS protein involved in the shikimate pathway. - Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, Marcin Cieslik:
A systematic overview of single-cell transcriptomics databases, their use cases, and limitations. - Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba:
Pangenome comparison via ED strings. - Rafal A. Bachorz, Damian Nowak, Marcin Ratajewski:
QSPRmodeler - An open source application for molecular predictive analytics.
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2025-05-06 21:36 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
