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Books and Theses
- 2009
[b1]Mathias Möhl:
Dynamic programming based RNA pseudoknot alignment. Saarland University, 2009
Journal Articles
- 2015
- [j8]Sebastian Will, Christina Otto, Milad Miladi
, Mathias Möhl, Rolf Backofen:
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics. Bioinform. 31(15): 2489-2496 (2015) - 2014
- [j7]Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Rolf Backofen, Sebastian Will:
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs. BMC Bioinform. 15: 6602 (2014) - [j6]Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Otto, Sebastian Will:
Local Exact Pattern Matching for Non-FixedRNA Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 219-230 (2014) - 2013
- [j5]Georg Sauthoff, Mathias Möhl, Stefan Janssen, Robert Giegerich:
Bellman's GAP - a language and compiler for dynamic programming in sequence analysis. Bioinform. 29(5): 551-560 (2013) - 2012
- [j4]Dragos Alexandru Sorescu, Mathias Möhl, Martin Mann, Rolf Backofen, Sebastian Will:
CARNA - alignment of RNA structure ensembles. Nucleic Acids Res. 40(Web-Server-Issue): 49-53 (2012) - 2011
- [j3]Rolf Backofen, Gad M. Landau, Mathias Möhl, Dekel Tsur, Oren Weimann:
Fast RNA structure alignment for crossing input structures. J. Discrete Algorithms 9(1): 2-11 (2011) - 2010
- [j2]Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp:
Sparsification of RNA structure prediction including pseudoknots. Algorithms Mol. Biol. 5: 39 (2010) - [j1]Mathias Möhl, Sebastian Will, Rolf Backofen:
Lifting Prediction to Alignment of RNA Pseudoknots. J. Comput. Biol. 17(3): 429-442 (2010)
Conference and Workshop Papers
- 2013
- [c12]Sebastian Will, Christina Schmiedl, Milad Miladi, Mathias Möhl, Rolf Backofen:
SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics. RECOMB 2013: 289-290 - 2012
- [c11]Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Schmiedl, Sebastian Will:
Local Exact Pattern Matching for Non-fixed RNA Structures. CPM 2012: 306-320 - [c10]Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen:
Exact Pattern Matching for RNA Structure Ensembles. RECOMB 2012: 245-260 - 2010
- [c9]Alessandro Dal Palù, Mathias Möhl, Sebastian Will:
A Propagator for Maximum Weight String Alignment with Arbitrary Pairwise Dependencies. CP 2010: 167-175 - [c8]Alessandro Dal Palù, Mathias Möhl, Sebastian Will:
Alignnment of RNA with Structures of Unlimited Complexity. WCB@ICLP 2010: 53-58 - [c7]Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen:
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. RECOMB 2010: 473-490 - [c6]Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp:
Sparsification of RNA Structure Prediction Including Pseudoknots. WABI 2010: 40-51 - 2009
- [c5]Rolf Backofen, Gad M. Landau, Mathias Möhl, Dekel Tsur, Oren Weimann:
Fast RNA Structure Alignment for Crossing Input Structures. CPM 2009: 236-248 - [c4]Mathias Möhl, Sebastian Will, Rolf Backofen:
Lifting Prediction to Alignment of RNA Pseudoknots. RECOMB 2009: 285-301 - 2008
- [c3]Mathias Möhl, Sebastian Will, Rolf Backofen:
Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots. CPM 2008: 69-81 - 2007
- [c2]Marco Kuhlmann, Mathias Möhl:
Mildly Context-Sensitive Dependency Languages. ACL 2007 - 2006
- [c1]Marco Kuhlmann, Mathias Möhl:
Extended Cross-Serial Dependencies in Tree Adjoining Grammars. TAG 2006: 121-126
Coauthor Index
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