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ORCIDE. Michael Gertz
Person information
- affiliation: National Center for Biotechnology Information, Bethesda, MD, USA
- affiliation: University of Wisconsin at Madison, Computer Science Department, WI, USA
- affiliation: Argonne National Laboratory, Mathematics and Computer Science Division, IL, USA
- affiliation (PhD): University of California, San Diego, CA, USA
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Journal Articles
- 2021
[j12]Haoyun Lei, E. Michael Gertz, Alejandro A. Schäffer, Xuecong Fu, Yifeng Tao, Kerstin Heselmeyer-Haddad, Irianna Torres, Guibo Li
, Liqin Xu, Yong Hou, Kui Wu, Xulian Shi, Michael Dean, Thomas Ried, Russell Schwartz:
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data. Bioinform. 37(24): 4704-4711 (2021)- 2020
- [j11]Erfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikic, Xuan Cindy Li, Osnat Bartok, Kevin Litchfield, Ronen Levy, Yardena Samuels, Alejandro A. Schäffer, E. Michael Gertz, Chi-Ping Day, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Glenn Merlino, Funda Ergün, Süleyman Cenk Sahinalp:
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem. Bioinform. 36(Supplement-1): i169-i176 (2020) - [j10]Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz:
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. J. Comput. Biol. 27(4): 565-598 (2020) - 2015
- [j9]Salim Akhter Chowdhury, E. Michael Gertz, Darawalee Wangsa, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A. Schäffer, Russell Schwartz:
Inferring models of multiscale copy number evolution for single-tumor phylogenetics. Bioinform. 31(12): 258-267 (2015) - 2014
- [j8]Edward Michael Gertz, Tero Hiekkalinna, Sébastien Le Digabel, Charles Audet, Joseph D. Terwilliger, Alejandro A. Schäffer:
PSEUDOMARKER 2.0: efficient computation of likelihoods using NOMAD. BMC Bioinform. 15: 47 (2014) - 2010
- [j7]E. Michael Gertz, Joshua D. Griffin:
Using an iterative linear solver in an interior-point method for generating support vector machines. Comput. Optim. Appl. 47(3): 431-453 (2010) - 2006
- [j6]Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala:
WindowMasker: window-based masker for sequenced genomes. Bioinform. 22(2): 134-141 (2006) - [j5]Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala:
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences. J. Comput. Biol. 13(5): 1028-1040 (2006) - 2004
- [j4]E. Michael Gertz, Jorge Nocedal, Annick Sartenaer:
A starting point strategy for nonlinear interior methods. Appl. Math. Lett. 17(8): 945-952 (2004) - [j3]E. Michael Gertz, Philip E. Gill:
A primal-dual trust region algorithm for nonlinear optimization. Math. Program. 100(1): 49-94 (2004) - [j2]E. Michael Gertz:
A quasi-Newton trust-region method. Math. Program. 100(3): 447-470 (2004) - 2003
- [j1]E. Michael Gertz, Stephen J. Wright:
Object-oriented software for quadratic programming. ACM Trans. Math. Softw. 29(1): 58-81 (2003)
Conference and Workshop Papers
- 2019
- [c3]Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz:
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. RECOMB 2019: 174-189 - 2018
- [c2]Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Russell Schwartz:
Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing Data. ICCABS 2018: 1 - 2008
- [c1]Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu:
The effectiveness of position- and composition-specific gap costs for protein similarity searches. ISMB 2008: 15-23
Informal and Other Publications
- 2001
- [i1]E. Michael Gertz, Philip E. Gill, Julia Muetherig:
Users Guide for SnadiOpt: A Package Adding Automatic Differentiation to Snopt. CoRR cs.MS/0106051 (2001)
Coauthor Index
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