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Journal Articles
- 2022
[j17]David E. Graff, Matteo Aldeghi
, Joseph A. Morrone, Kirk E. Jordan, Edward O. Pyzer-Knapp, Connor W. Coley:
Self-Focusing Virtual Screening with Active Design Space Pruning. J. Chem. Inf. Model. 62(16): 3854-3862 (2022)- [j16]Matteo Aldeghi, David E. Graff, Nathan C. Frey, Joseph A. Morrone, Edward O. Pyzer-Knapp, Kirk E. Jordan, Connor W. Coley:
Roughness of Molecular Property Landscapes and Its Impact on Modellability. J. Chem. Inf. Model. 62(19): 4660-4671 (2022) - 2021
- [j15]Jony Castangna, Fausto Martelli, Kirk E. Jordan, Jason Crain:
Simulation of large molecular systems with electronically-derived forces. Comput. Phys. Commun. 264: 107959 (2021) - 2018
- [j14]Debanjan Datta, David Appelhans, Constantinos Evangelinos, Kirk E. Jordan:
An Asynchronous Two-Level Checkpointing Method to Solve Adjoint Problems on Hierarchical Memory Spaces. Comput. Sci. Eng. 20(4): 39-55 (2018) - 2017
- [j13]Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan:
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. BMC Bioinform. 18(1): 467 (2017) - 2014
- [j12]Kirk E. Jordan, Ji Li, Thomas J. Peters, John A. Roulier:
Isotopic equivalence by Bézier curve subdivision for application to high performance computing. Comput. Aided Geom. Des. 31(9): 642-655 (2014) - 2013
- [j11]Constantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein:
Determination of performance characteristics of scientific applications on IBM Blue Gene/Q. IBM J. Res. Dev. 57(1/2): 9 (2013) - [j10]David E. Keyes, Lois C. McInnes, Carol S. Woodward, William Gropp, Eric Myra, Michael Pernice, John B. Bell, Jed Brown, Alain Clo, Jeffrey M. Connors, Emil M. Constantinescu, Donald J. Estep, Kate Evans, Charbel Farhat, Ammar Hakim, Glenn Hammond, Glen Hansen, Judith Hill, Tobin Isaac, Xiangmin Jiao, Kirk E. Jordan, Dinesh K. Kaushik, Efthimios Kaxiras, Alice E. Koniges, Kihwan Lee, Aaron Lott, Qiming Lu, John Magerlein, Reed Maxwell, Michael McCourt, Miriam Mehl, Roger P. Pawlowski, Amanda Peters Randles, Daniel R. Reynolds, Beatrice Riviere, Ulrich Rüde, Timothy D. Scheibe, John N. Shadid, Brendan Sheehan, Mark S. Shephard, Andrew R. Siegel, Barry Smith, Xianzhu Tang, Cian Wilson, Barbara I. Wohlmuth:
Multiphysics simulations: Challenges and opportunities. Int. J. High Perform. Comput. Appl. 27(1): 4-83 (2013) - 2012
- [j9]Moustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva, James C. Sexton, Hani Jamjoom, Zon-Yin Shae, Gergina Pencheva, Reza Tavakoli, Mary F. Wheeler:
Enabling High-Performance Computing as a Service. Computer 45(10): 72-80 (2012) - 2011
- [j8]Peter R. Turner, Linda R. Petzold, Angela B. Shiflet, Ignatios Vakalis, Kirk E. Jordan, Samuel St. John:
Undergraduate Computational Science and Engineering Education. SIAM Rev. 53(3): 561-574 (2011) - [j7]Ray Tuminaro, Michele Benzi, Xiao-Chuan Cai, Iain Duff, Howard C. Elman, Roland Freund, Kirk E. Jordan, Tim Kelley, David E. Keyes, Misha Elena Kilmer, Sven Leyffer, Tom Manteuffel, Steve F. McCormick, David J. Silvester, Homer F. Walker:
Special Section: 2010 Copper Mountain Conference. SIAM J. Sci. Comput. 33(5): 2685 (2011) - 2008
- [j6]Kirk E. Jordan, Lance Edward Miller, Edward L. F. Moore, Thomas J. Peters, Alexander Russell:
Modeling time and topology for animation and visualization with examples on parametric geometry. Theor. Comput. Sci. 405(1-2): 41-49 (2008) - 2006
- [j5]Steve Burbeck, Kirk E. Jordan:
Preface. IBM J. Res. Dev. 50(6): 527-528 (2006) - [j4]Steve Burbeck, Kirk E. Jordan:
An assessment of the role of computing in systems biology. IBM J. Res. Dev. 50(6): 529-544 (2006) - 2004
- [j3]Kirk E. Jordan:
Preface. IBM J. Res. Dev. 48(2): 151-152 (2004) - [j2]George I. Fann, Gregory Beylkin, Robert J. Harrison, Kirk E. Jordan:
Singular operators in multiwavelet bases. IBM J. Res. Dev. 48(2): 161-172 (2004) - 1987
- [j1]Kirk E. Jordan:
Performance Comparison of Large-Scale Scientific Computers: Scalar Mainframes, Mainframes with Integrated Vector Facilities, and Supercomputers. Computer 20(3): 10-23 (1987)
Conference and Workshop Papers
- 2018
- [c20]Malgorzata J. Zimon, Vadim V. Elisseev, Robert Sawko, Samuel Antão, Kirk E. Jordan:
Uncertainty quantification-as-a-service. CASCON 2018: 331-337 - [c19]Milos Puzovic, Vadim V. Elisseev, Kirk E. Jordan, James L. McDonagh, Alexander Harrison, Robert Sawko:
Improving Performance and Energy Efficiency on OpenPower Systems Using Scalable Hardware-Software Co-design. ISC Workshops 2018: 411-417 - 2016
- [c18]Ed Bennett, Biagio Lucini, Luigi Del Debbio, Kirk E. Jordan, Agostino Patella, Claudio Pica, Antonio Rago:
BSMBench: A flexible and scalable HPC benchmark from beyond the standard model physics. HPCS 2016: 834-839 - 2014
- [c17]Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan:
K-mer clustering algorithm using a MapReduce approach. BIBM 2014: 7-9 - [c16]Moustafa AbdelBaky, Javier Diaz Montes, Michael Johnston, Vipin Sachdeva, Richard L. Anderson, Kirk E. Jordan, Manish Parashar:
Exploring HPC-based scientific software as a service using CometCloud. CollaborateCom 2014: 35-44 - [c15]Vipin Sachdeva, Chang Sik Kim, Kirk E. Jordan, Martyn D. Winn:
Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. IPDPS Workshops 2014: 566-575 - [c14]Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang:
Algebraic Multigrid on a Dragonfly Network: First Experiences on a Cray XC30. PMBS@SC 2014: 3-23 - 2013
- [c13]Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang:
Systematic Reduction of Data Movement in Algebraic Multigrid Solvers. IPDPS Workshops 2013: 1675-1682 - 2012
- [c12]Hugh P. Cassidy, Thomas J. Peters, Kirk E. Jordan:
Dynamic Computational Topology for Piecewise Linear Curves. CCCG 2012: 265-270 - [c11]Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang:
Modeling the Performance of an Algebraic Multigrid Cycle Using Hybrid MPI/OpenMP. ICPP 2012: 128-137 - [c10]Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang:
Performance Modeling of Algebraic Multigrid on Blue Gene/Q: Lessons Learned. SC Companion 2012: 377-385 - [c9]Mi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva, Timothy J. Tautges, John Magerlein:
Coupling a Basin Modeling and a Seismic Code using MOAB. ICCS 2012: 986-993 - 2011
- [c8]Hormozd Gahvari, Allison H. Baker, Martin Schulz, Ulrike Meier Yang, Kirk E. Jordan, William Gropp:
Modeling the performance of an algebraic multigrid cycle on HPC platforms. ICS 2011: 172-181 - 2010
- [c7]Tran Vu Pham, Hani Jamjoom, Kirk E. Jordan, Zon-Yin Shae:
A service composition framework for market-oriented high performance computing cloud. HPDC 2010: 284-287 - 2007
- [c6]William D. Gropp, Wolfgang Frings, Marc-André Hermanns, Ed Jedlicka, Kirk E. Jordan, Fred Mintzer, Boris Orth:
Scaling Science Applications on Blue Gene. PARCO 2007: 583-584 - 1998
- [c5]Robert Haimes, Kirk E. Jordan:
Using PVM and MPI for Co-processed, Distributed and Parallel Scientific Visualization. IPPS/SPDP Workshops 1998: 1098-1105 - 1996
- [c4]Kirk E. Jordan, David A. Yuen, David M. Reuteler, Shuxia Zhang:
Distributed visualization of 3D thermal convection in the geological sciences. Parallel CFD 1996: 243-250 - 1993
- [c3]Adam Greenberg, Marcelo Rame, Kirk E. Jordan, Mary F. Wheeler:
UTCHEM: A Chemical Flood Simulator on the CM5. PPSC 1993: 1011-1014 - 1992
- [c2]Andrei V. Malevsky, David A. Yuen, Kirk E. Jordan:
Simulation of Particle Mixing by Turbulent Convective Flows on the Connection Machine. SC 1992: 294-300 - 1988
- [c1]Kirk E. Jordan:
The Good, The Bad, and The Ugly: Comparing High Speed Computer Systems. COMPCON 1988: 90-96
Parts in Books or Collections
- 2014
- [p2]Hugh P. Cassidy, Thomas J. Peters, Horea T. Ilies, Kirk E. Jordan:
Topological Integrity for Dynamic Spline Models During Visualization of Big Data. Topological Methods in Data Analysis and Visualization 2014: 167-183 - 2011
- [p1]Kirk E. Jordan, Lance Edward Miller, Thomas J. Peters, Alexander C. Russell:
Geometric Topology & Visualizing 1-Manifolds. Topological Methods in Data Analysis and Visualization 2011: 1-12
Informal and Other Publications
- 2022
- [i5]David E. Graff, Matteo Aldeghi, Joseph A. Morrone, Kirk E. Jordan, Edward O. Pyzer-Knapp, Connor W. Coley:
Self-focusing virtual screening with active design space pruning. CoRR abs/2205.01753 (2022) - 2020
- [i4]Kirk E. Jordan, Ji Li, Thomas J. Peters:
Knot Morphing Algorithm for Quantum 'Fragile Topology'. CoRR abs/2005.08873 (2020) - 2016
- [i3]Ulrich Rüde, Karen Willcox, Lois Curfman McInnes, Hans De Sterck, George Biros, Hans-Joachim Bungartz, James Corones, Evin Cramer, James Crowley, Omar Ghattas, Max D. Gunzburger, Michael Hanke, Robert J. Harrison, Michael A. Heroux, Jan S. Hesthaven, Peter K. Jimack, Chris Johnson, Kirk E. Jordan, David E. Keyes, Rolf H. Krause, Vipin Kumar, Stefan Mayer, Juan Meza, Knut Martin Mørken, J. Tinsley Oden, Linda R. Petzold, Padma Raghavan, Suzanne M. Shontz, Anne E. Trefethen, Peter R. Turner, Vladimir V. Voevodin, Barbara I. Wohlmuth, Carol S. Woodward:
Research and Education in Computational Science and Engineering. CoRR abs/1610.02608 (2016) - 2014
- [i2]Ji Li, Thomas J. Peters, Kirk E. Jordan:
Computational Topology for Approximations of Knots. CoRR abs/1401.3370 (2014) - [i1]Ed Bennett, Luigi Del Debbio, Kirk E. Jordan, Biagio Lucini, Agostino Patella, Claudio Pica, Antonio Rago:
BSMBench: a flexible and scalable supercomputer benchmark from computational particle physics. CoRR abs/1401.3733 (2014)
Coauthor Index
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