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Steve Horvath
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2020 – today
- 2024
- [j22]Mary E. Sehl, Elizabeth Crabb Breen, Roger Shih, Fengxue Li, Joshua Zhang, Peter Langfelder, Steve Horvath, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Beth D. Jamieson:
Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV. Frontiers Bioinform. 4 (2024) - [j21]Joshua Zhang, Mary E. Sehl, Roger Shih, Elizabeth Crabb Breen, Fengxue Li, Ake T. Lu, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Steve Horvath, Beth D. Jamieson:
Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV. Frontiers Bioinform. 4 (2024) - 2023
- [j20]Wubin Ding
, Diljeet Kaur, Steve Horvath, Wanding Zhou
:
Comparative epigenome analysis using Infinium DNA methylation BeadChips. Briefings Bioinform. 24(1) (2023)
2010 – 2019
- 2013
- [j19]Lin Song, Peter Langfelder, Steve Horvath:
Random generalized linear model: a highly accurate and interpretable ensemble predictor. BMC Bioinform. 14: 5 (2013) - [j18]John M. O. Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath:
Cluster and propensity based approximation of a network. BMC Syst. Biol. 7: 21 (2013) - 2012
- [j17]Lin Song, Peter Langfelder, Steve Horvath:
Comparison of co-expression measures: mutual information, correlation, and model based indices. BMC Bioinform. 13: 328 (2012) - [j16]Michael C. Oldham, Peter Langfelder, Steve Horvath:
Network methods for describing sample relationships in genomic datasets: application to Huntington's disease. BMC Syst. Biol. 6: 63 (2012) - [j15]Austin T. Hilliard
, Julie E. Miller
, Steve Horvath, Stephanie A. White:
Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds. PLoS Comput. Biol. 8(11) (2012) - 2011
- [j14]Jeremy A. Miller, Chaochao Cai, Peter Langfelder, Daniel H. Geschwind, Sunil M. Kurian
, Daniel R. Salomon, Steve Horvath:
Strategies for aggregating gene expression data: The collapseRows R function. BMC Bioinform. 12: 322 (2011) - [j13]Christopher C. Park
, Greg D. Gale, Simone de Jong
, Anatole Ghazalpour, Brian J. Bennett
, Charles R. Farber
, Peter Langfelder, Andy Lin, Arshad H. Khan, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith:
Gene networks associated with conditional fear in mice identified using a systems genetics approach. BMC Syst. Biol. 5: 43 (2011) - [j12]Peter Langfelder, Rui Luo, Michael C. Oldham, Steve Horvath:
Is My Network Module Preserved and Reproducible? PLoS Comput. Biol. 7(1) (2011) - [p1]Tova Fuller, Peter Langfelder, Angela P. Presson, Steve Horvath:
Review of Weighted Gene Coexpression Network Analysis. Handbook of Statistical Bioinformatics 2011: 369-388 - 2010
- [j11]Jeanette A. Mumford, Steve Horvath, Michael C. Oldham, Peter Langfelder, Daniel H. Geschwind, Russell A. Poldrack
:
Detecting network modules in fMRI time series: A weighted network analysis approach. NeuroImage 52(4): 1465-1476 (2010) - [c5]Peter Langfelder, Tova Fuller, Steve Horvath:
Comparing Robust Methods for Defining Directed Networks and Their Hub Nodes. BIOCOMP 2010: 687-692
2000 – 2009
- 2008
- [j10]Peter Langfelder, Bin Zhang, Steve Horvath:
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinform. 24(5): 719-720 (2008) - [j9]Peter Langfelder, Steve Horvath:
WGCNA: an R package for weighted correlation network analysis. BMC Bioinform. 9 (2008) - [j8]Jason E. Aten, Tova Fuller, Aldons J. Lusis, Steve Horvath:
Using genetic markers to orient the edges in quantitative trait networks: The NEO software. BMC Syst. Biol. 2: 34 (2008) - [j7]Angela P. Presson, Eric M. Sobel
, Jeanette C. Papp, Charlyn J. Suarez, Toni Whistler, Mangalathu S. Rajeevan, Suzanne D. Vernon, Steve Horvath:
Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome. BMC Syst. Biol. 2: 95 (2008) - [j6]Steve Horvath, Jun Dong:
Geometric Interpretation of Gene Coexpression Network Analysis. PLoS Comput. Biol. 4(8) (2008) - 2007
- [j5]Ai Li, Steve Horvath:
Network neighborhood analysis with the multi-node topological overlap measure. Bioinform. 23(2): 222-231 (2007) - [j4]Andy M. Yip, Steve Horvath:
Gene network interconnectedness and the generalized topological overlap measure. BMC Bioinform. 8 (2007) - [j3]Jun Dong, Steve Horvath:
Understanding network concepts in modules. BMC Syst. Biol. 1: 24 (2007) - [j2]Peter Langfelder, Steve Horvath:
Eigengene networks for studying the relationships between co-expression modules. BMC Syst. Biol. 1: 54 (2007) - 2006
- [c4]Ai Li, Steve Horvath:
The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis. BIOCOMP 2006: 445-450 - [c3]Andy M. Yip, Steve Horvath:
The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks. BIOCOMP 2006: 451-457 - [c2]Wei Zhao, Paul Mischel, Marc Carlson, Bin Zhang, Stanley Nelson, Steve Horvath:
A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays. BIOCOMP 2006: 458-464 - [c1]Steve Horvath, Jun Dong, Andy M. Yip:
The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks. BIOCOMP 2006: 465-471 - 2005
- [j1]Bin Zhang, Steve Horvath:
Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping. Int. J. Bioinform. Res. Appl. 1(3): 261-272 (2005)
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