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ORCIDSharlee Climer
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Journal Articles
- 2024
[j12]Kenneth Smith, Sharlee Climer:
Capturing biomarkers associated with Alzheimer disease subtypes using data distribution characteristics. Frontiers Comput. Neurosci. 18 (2024)- 2021
- [j11]Sharlee Climer:
COVID-19 and the differential dilemma. Patterns 2(5): 100260 (2021) - [j10]Sharlee Climer
:
Connecting the dots: The boons and banes of network modeling. Patterns 2(12): 100374 (2021) - 2020
- [j9]Matthew Lane, Alberto Maiocco, Sanjiv K. Bhatia, Sharlee Climer:
Chapter Four - Eyeing the patterns: Data visualization using doubly-seriated color heatmaps. Adv. Comput. 119: 121-156 (2020) - 2019
- [j8]Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson:
Parallel accelerated Custom Correlation Coefficient calculations for genomics applications. Parallel Comput. 84: 15-23 (2019) - 2016
- [j7]Gerold Jäger, Sharlee Climer, Weixiong Zhang:
The complete parsimony haplotype inference problem and algorithms based on integer programming, branch-and-bound and Boolean satisfiability. J. Discrete Algorithms 37: 68-83 (2016) - 2014
- [j6]Sharlee Climer, Alan R. Templeton, Weixiong Zhang:
Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS. PLoS Comput. Biol. 10(9) (2014) - 2009
- [j5]Sharlee Climer, Gerold Jäger, Alan R. Templeton, Weixiong Zhang:
How frugal is mother nature with haplotypes? Bioinform. 25(1): 68-74 (2009) - 2006
- [j4]Sharlee Climer, Weixiong Zhang:
Cut-and-solve: An iterative search strategy for combinatorial optimization problems. Artif. Intell. 170(8-9): 714-738 (2006) - [j3]Sharlee Climer, Weixiong Zhang:
Rearrangement Clustering: Pitfalls, Remedies, and Applications. J. Mach. Learn. Res. 7: 919-943 (2006) - 2003
- [j2]Sharlee Climer, Sanjiv K. Bhatia:
Local Lines: A linear time line detector. Pattern Recognit. Lett. 24(14): 2291-2300 (2003) - 2002
- [j1]Sharlee Climer, Sanjiv K. Bhatia:
Image database indexing using JPEG coefficients. Pattern Recognit. 35(11): 2479-2488 (2002)
Conference and Workshop Papers
- 2023
- [c11]Kenneth Smith, Sharlee Climer:
Mr. Clean: An Ensemble of Data Cleaning Algorithms for Increased Data Retention. BIBM 2023: 3149-3156 - [c10]Kenneth Smith, Michael Chan, John Brandenburg, Katarina A Jones, Shawn R. Campagna, Michael Garvin, Alan R. Templeton, Daniel A. Jacobson, Carlos Cruchaga, Sharlee Climer:
Predicting COVID-19 Severity Using a Cut-and-Solve Feature Selection Approach. BIBM 2023: 3370-3375 - 2021
- [c9]Kenneth Smith, Jamie Lea, Sharlee Climer:
Finding Single and Multi-Gene Expression Patterns for Psoriasis Using Sub-Pattern Frequency Pruning. BIBM 2021: 2322-2329 - 2020
- [c8]Jamie Lea, Sharlee Climer:
A Search and Filter Strategy for Identifying Differentially Co-Expressed Analyte Modules. BIBM 2020: 2974-2976 - 2019
- [c7]Kenneth Smith, Cezary Z. Janikow, Sharlee Climer:
Evolving to recognize high-dimensional relationships in data: GA operators and representation designed expressly for community detection. GECCO (Companion) 2019: 308-309 - 2018
- [c6]Wayne Joubert, Deborah A. Weighill, David Kainer, Sharlee Climer, Amy Justice, Kjiersten Fagnan, Daniel A. Jacobson:
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction. SC 2018: 57:1-57:14 - 2010
- [c5]Sharlee Climer, Alan R. Templeton, Weixiong Zhang:
SplittingHeirs: inferring haplotypes by optimizing resultant dense graphs. BCB 2010: 127-136 - 2009
- [c4]Gerold Jäger, Sharlee Climer, Weixiong Zhang:
Complete Parsimony Haplotype Inference Problem and Algorithms. ESA 2009: 337-348 - 2004
- [c3]Sharlee Climer, Weixiong Zhang:
A Linear Search Strategy using Bounds. ICAPS 2004: 132-141 - [c2]Sharlee Climer, Weixiong Zhang:
Take a walk and cluster genes: a TSP-based approach to optimal rearrangement clustering. ICML 2004 - 2002
- [c1]Sharlee Climer, Weixiong Zhang:
Searching for Backbones and Fat: A Limit-Crossing Approach with Applications. AAAI/IAAI 2002: 707-712
Informal and Other Publications
- 2024
- [i4]Kenneth Smith, Sharlee Climer:
Improving Data Cleaning Using Discrete Optimization. CoRR abs/2405.00764 (2024) - [i3]Sharlee Climer, Kenneth Smith, Wei Yang, Lisa de las Fuentes, Victor G. Dávila-Román, C. Charles Gu:
Sifting out communities in large sparse networks. CoRR abs/2405.00816 (2024) - 2021
- [i2]Luca Pion-Tonachini, Kristofer E. Bouchard, Héctor García Martín, Sean Peisert, W. Bradley Holtz, Anil Aswani, Dipankar Dwivedi, Haruko M. Wainwright, Ghanshyam Pilania, Benjamin Nachman, Babetta L. Marrone, Nicola Falco, Prabhat, Daniel B. Arnold, Alejandro Wolf-Yadlin, Sarah Powers, Sharlee Climer, Quinn Jackson, Ty Carlson, Michael Sohn, Petrus H. Zwart, Neeraj Kumar, Amy Justice, Claire J. Tomlin, Daniel A. Jacobson, Gos Micklem, Georgios V. Gkoutos, Peter J. Bickel, Jean-Baptiste Cazier, Juliane Müller, Bobbie-Jo Webb-Robertson, Rick Stevens, Mark Anderson, Kenneth Kreutz-Delgado, Michael W. Mahoney, James B. Brown:
Learning from learning machines: a new generation of AI technology to meet the needs of science. CoRR abs/2111.13786 (2021) - 2017
- [i1]Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson:
Parallel Accelerated Custom Correlation Coefficient Calculations for Genomics Applications. CoRR abs/1705.08213 (2017)
Coauthor Index
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