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Journal Articles
- 2024
[j10]Akhila Abdulnazar, Roland Roller, Stefan Schulz, Markus Kreuzthaler:
Large Language Models for Clinical Text Cleansing Enhance Medical Concept Normalization. IEEE Access 12: 147981-147990 (2024)- [j9]Amila Kugic
, Stefan Schulz, Markus Kreuzthaler:
Disambiguation of acronyms in clinical narratives with large language models. J. Am. Medical Informatics Assoc. 31(9): 2040-2046 (2024) - [j8]Akhila Abdulnazar, Amila Kugic, Stefan Schulz, Vanessa Stadlbauer, Markus Kreuzthaler:
O2 supplementation disambiguation in clinical narratives to support retrospective COVID-19 studies. BMC Medical Informatics Decis. Mak. 24(1): 29 (2024) - 2023
- [j7]Amila Kugic, Bastian Pfeifer, Stefan Schulz, Markus Kreuzthaler:
Embedding-based terminology expansion via secondary use of large clinical real-world datasets. J. Biomed. Informatics 147: 104497 (2023) - 2019
- [j6]Michel Oleynik, Amila Kugic, Zdenko Kasác, Markus Kreuzthaler:
Evaluating shallow and deep learning strategies for the 2018 n2c2 shared task on clinical text classification. J. Am. Medical Informatics Assoc. 26(11): 1247-1254 (2019) - [j5]Markus Kreuzthaler, Bastian Pfeifer, José Antonio Vera Ramos, Diether Kramer, Victor Grogger, Sylvia Bredenfeldt, Markus Pedevilla, Peter Krisper, Stefan Schulz:
EHR problem list clustering for improved topic-space navigation. BMC Medical Informatics Decis. Mak. 19-S(3): 107-114 (2019) - 2015
- [j4]Markus Kreuzthaler, Stefan Schulz, Andrea Berghold:
Secondary use of electronic health records for building cohort studies through top-down information extraction. J. Biomed. Informatics 53: 188-195 (2015) - [j3]Markus Kreuzthaler, Stefan Schulz:
Detection of sentence boundaries and abbreviations in clinical narratives. BMC Medical Informatics Decis. Mak. 15-S(S-2): S4 (2015) - 2011
- [j2]Markus Kreuzthaler, Marcus D. Bloice, Lukas Faulstich, Klaus-Martin Simonic, Andreas Holzinger:
A Comparison of Different Retrieval Strategies Working on Medical Free Texts. J. Univers. Comput. Sci. 17(7): 1109-1133 (2011) - 2007
- [j1]Markus Quaritsch, Markus Kreuzthaler, Bernhard Rinner, Horst Bischof, Bernhard Strobl:
Autonomous Multicamera Tracking on Embedded Smart Cameras. EURASIP J. Embed. Syst. 2007 (2007)
Conference and Workshop Papers
- 2024
- [c37]Amila Kugic, Akhila Abdulnazar, Anto Knezovic, Stefan Schulz, Markus Kreuzthaler:
Smoking Status Classification: A Comparative Analysis of Machine Learning Techniques with Clinical Real World Data. AIME (1) 2024: 182-191 - [c36]Vishakha Sharma, Andreas Thalhammer, Amila Kugic, Stefan Schulz, Markus Kreuzthaler:
Sequence-Model-Based Medication Extraction from Clinical Narratives in German. AIME (1) 2024: 334-344 - [c35]Amila Kugic, Stefan Schulz, Markus Kreuzthaler:
Term Candidate Generation to Enrich Clinical Terminologies with Large Language Models. MIE 2024: 695-699 - [c34]Sareh Aghaei Dinani, Remzi Celebi, Markus Kreuzthaler, Stefan Schulz:
From Clinical Information Systems to Personalized Health Knowledge Graphs. MIE 2024: 1463-1464 - [c33]Akhila Abdulnazar, Markus Kreuzthaler, Stefan Schulz, Barbara Prietl, Laurin Herbsthofer:
Tumor Board Visualization: Integrating Clinical and Laboratory Insights. MIE 2024: 1750-1751 - 2023
- [c32]Amila Kugic, Stefan Schulz, Markus Kreuzthaler:
Identification of Non-Lexical Content in Croatian Health Forum Entries. BIBM 2023: 4328-4335 - [c31]Amila Kugic, Markus Kreuzthaler, Stefan Schulz:
Clinical Acronym Disambiguation via ChatGPT and BING. EFMI-STC 2023: 78-82 - [c30]Stefan Schulz, Warren Del-Pinto, Lifeng Han, Markus Kreuzthaler, Sareh Aghaei Dinani, Goran Nenadic:
Towards Principles of Ontology-Based Annotation of Clinical Narratives. ICBO 2023: 36-47 - [c29]Markus Kreuzthaler, Bastian Pfeifer, Diether Kramer, Stefan Schulz:
Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment. MIE 2023: 788-792 - [c28]Akhila Abdulnazar, Markus Kreuzthaler, Roland Roller, Stefan Schulz:
SapBERT-Based Medical Concept Normalization Using SNOMED CT. MIE 2023: 825-826 - [c27]Amila Kugic, Bastian Pfeifer, Stefan Schulz, Markus Kreuzthaler:
Data-Driven Identification of Clinical Real-World Expressions Linked to ICD. MIE 2023: 827-828 - [c26]Stefan Schulz, Akhila Abdulnazar, Markus Kreuzthaler:
Clustering Similar Diagnosis Terms. MIE 2023: 837-838 - 2022
- [c25]Markus Kreuzthaler, Bastian Pfeifer, Stefan Schulz:
Terminology Expansion via Co-occurrence Analysis of Large Clinical Real-World Datasets. ICHI 2022: 1-2 - [c24]Amila Kugic, Leon Magnus Pojian, Larissa Marije Hammer, Stefan Schulz, Markus Kreuzthaler:
Alcohol Status Standardization from Clinical Real World Data with Transformer Architectures. ICHI 2022: 233-238 - [c23]Mohamed Khaled, Mahdi Sareban, Markus Kreuzthaler, Stefan Schulz, Rada Hussein:
Overview of Existing Tools for Extracting Health and Fitness Data from mHealth Apps. ICIMTH 2022: 49-50 - 2020
- [c22]Stefan Schulz, Larissa Hammer, David Hashemian Nik, Markus Kreuzthaler:
Localising the Clinical Terminology SNOMED CT by Semi-automated Creation of a German Interface Vocabulary. MultiligualBIO@LREC 2020: 15-20 - [c21]Markus Kreuzthaler, Michel Oleynik, Stefan Schulz:
Character-Level Neural Language Modelling in the Clinical Domain. MIE 2020: 83-87 - 2019
- [c20]José Antonio Vera Ramos, Markus Kreuzthaler, Stefan Schulz:
Supervised ICD Code Assignment to Short Clinical Problem List Entries. EFMI-STC 2019: 184-188 - 2018
- [c19]Markus Kreuzthaler, Bastian Pfeifer, José Antonio Vera Ramos, Diether Kramer, Victor Grogger, Sylvia Bredenfeldt, Markus Pedevilla, Peter Krisper, Stefan Schulz:
EHR Text Categorization for Enhanced Patient-Based Document Navigation. eHealth 2018: 100-107 - [c18]Markus Kreuzthaler, Bastian Pfeifer, José Antonio Vera Ramos, Diether Kramer, Victor Grogger, Sylvia Bredenfeldt, Markus Pedevilla, Peter Krisper, Stefan Schulz:
Problem List Clustering for Improved Patient-Based Disease Perception. ICHI Workshops 2018: 88-89 - 2017
- [c17]Markus Kreuzthaler, Catalina Martínez-Costa, Peter Kaiser, Stefan Schulz:
Semantic Technologies for Re-Use of Clinical Routine Data. eHealth 2017: 24-31 - [c16]Zdenko Kasác, Catalina Martínez-Costa, Markus Kreuzthaler, Stefan Schulz:
Basics of a Drug Ontology for Annotations of Clinical Narratives. JOWO 2017 - [c15]Michel Oleynik, Markus Kreuzthaler, Stefan Schulz:
Unsupervised Abbreviation Expansion in Clinical Narratives. MedInfo 2017: 539-543 - 2016
- [c14]Markus Kreuzthaler, Michel Oleynik, Alexander Avian, Stefan Schulz:
Unsupervised Abbreviation Detection in Clinical Narratives. ClinicalNLP@COLING 2016 2016: 91-98 - [c13]Pablo López-García, Markus Kreuzthaler, Stefan Schulz, Daniel Scherr, Philipp Daumke, Kornél G. Markó, Jan A. Kors, Erik M. van Mulligen, Xinkai Wang, Hanney Gonna, Elijah Behr, Angel Honrado:
SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data. eHealth 2016: 93-99 - [c12]Markus Kreuzthaler, José Antonio Miñarro-Giménez, Stefan Schulz:
MapReduce in the Cloud: A Use Case Study for Efficient Co-Occurrence Processing of MEDLINE Annotations with MeSH. MIE 2016: 582-586 - 2015
- [c11]Philipp Daumke, Claudia Riede, Thomas Fassbender, Angel Honrado, Markus Kreuzthaler, Pablo López-García, Stefan Schulz, Erik M. van Mulligen, Herman van Haagen, Jan A. Kors, Hanney Gonna, Xinkai Wang, Elijah Behr:
SEMCARE - Semantic Data Platform for Healthcare. AMIA 2015 - [c10]José Antonio Miñarro-Giménez, Markus Kreuzthaler, Stefan Schulz:
Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing. AMIA 2015 - [c9]Markus Kreuzthaler, Philipp Daumke, Stefan Schulz:
Semantic Retrieval and Navigation in Clinical Document Collections. eHealth 2015: 9-14 - [c8]José Antonio Miñarro-Giménez, Markus Kreuzthaler, Johannes Bernhardt-Melischnig, Catalina Martínez-Costa, Stefan Schulz:
Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations. MedInfo 2015: 716-720 - 2014
- [c7]Markus Kreuzthaler, Stefan Schulz:
Disambiguation of Period Characters in Clinical Narratives. Louhi@EACL 2014: 96-100 - 2013
- [c6]Stefan Schulz, Johannes Bernhardt-Melischnig, Markus Kreuzthaler, Philipp Daumke, Martin Boeker:
Machine vs. Human Translation of SNOMED CT Terms. MedInfo 2013: 581-584 - 2012
- [c5]Markus Kreuzthaler, Stefan Schulz:
Metonymies in Medical Terminologies. A SNOMED CT Case Study. AMIA 2012 - 2011
- [c4]Markus Kreuzthaler, Stefan Schulz:
Truecasing Clinical Narratives. MIE 2011: 589-593 - [c3]Marcus D. Bloice, Klaus-Martin Simonic, Markus Kreuzthaler, Andreas Holzinger:
Development of an Interactive Application for Learning Medical Procedures and Clinical Decision Making. USAB 2011: 211-224 - [c2]Markus Kreuzthaler, Marcus D. Bloice, Klaus-Martin Simonic, Andreas Holzinger:
Navigating through Very Large Sets of Medical Records: An Information Retrieval Evaluation Architecture for Non-standardized Text. USAB 2011: 455-470 - 2010
- [c1]Marcus D. Bloice, Markus Kreuzthaler, Klaus-Martin Simonic, Andreas Holzinger:
On the Paradigm Shift of Search on Mobile Devices: Some Remarks on User Habits. USAB 2010: 493-496
Informal and Other Publications
- 2024
- [i2]Bastian Pfeifer, Christel Sirocchi, Marcus D. Bloice, Markus Kreuzthaler, Martin Urschler:
Federated unsupervised random forest for privacy-preserving patient stratification. CoRR abs/2401.16094 (2024) - 2021
- [i1]Markus Kreuzthaler, Stefan Schulz:
Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment. CoRR abs/2112.13756 (2021)
Coauthor Index
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