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Journal Articles
- 2022
[j7]Chien-Chi Lo
, Migun Shakya, Ryan Connor, Karen Davenport, Mark Flynn, Adán Myers y Gutiérrez, Bin Hu, Po-E Li, Elais Player Jackson, Yan Xu, Patrick S. G. Chain:
EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts. Bioinform. 38(10): 2700-2704 (2022)- 2021
- [j6]Po-E Li, Adán Myers y Gutiérrez, Karen Davenport, Mark Flynn, Bin Hu, Chien-Chi Lo, Elais Player Jackson, Migun Shakya, Yan Xu, Jason D. Gans, Patrick S. G. Chain:
A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays. Bioinform. 37(7): 1024-1025 (2021) - [j5]Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Fnu Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais Player Jackson, Julia Kelliher, Po-E Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain:
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale. Frontiers Bioinform. 1 (2021) - 2016
- [j4]Shihai Feng, Chien-Chi Lo, Po-E Li, Patrick S. G. Chain:
ADEPT, a dynamic next generation sequencing data error-detection program with trimming. BMC Bioinform. 17: 109 (2016) - 2014
- [j3]Chien-Chi Lo, Patrick S. G. Chain:
Rapid evaluation and quality control of next generation sequencing data with FaQCs. BMC Bioinform. 15: 366 (2014) - 2006
- [j2]Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko:
Array2BIO: from microarray expression data to functional annotation of co-regulated genes. BMC Bioinform. 7: 307 (2006) - 2003
- [j1]Patrick S. G. Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak:
An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings Bioinform. 4(2): 105-123 (2003)
Conference and Workshop Papers
- 2021
- [c2]William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall:
Leveraging Ontologies within the National Microbiome Data Collaborative. ICBO 2021: 141-143 - 2006
- [c1]Cliff Han, Patrick S. G. Chain:
Finishing Repetitive Regions Automatically with Dupfinisher. BIOCOMP 2006: 142-147
Coauthor Index
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