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ORCIDEnno Ohlebusch
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- affiliation: University of Ulm, Germany
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2020 – today
- 2025
[c47]Jannik Olbrich, Thomas Büchler
, Enno Ohlebusch:
Generating Multiple Alignments of Genomes of the Same Species. BIOSTEC (1) 2025: 459-468- 2024
- [j42]Jannik Olbrich, Enno Ohlebusch, Thomas Büchler:
Generic Non-recursive Suffix Array Construction. ACM Trans. Algorithms 20(2): 18 (2024) - [c46]Enno Ohlebusch, Thomas Büchler, Jannik Olbrich:
Faster Computation of Chinese Frequent Strings and Their Net Frequencies. SPIRE 2024: 249-256 - 2023
- [j41]Thomas Büchler, Jannik Olbrich, Enno Ohlebusch:
Efficient short read mapping to a pangenome that is represented by a graph of ED strings. Bioinform. 39(5) (2023) - 2022
- [j40]Uwe Baier, Thomas Büchler, Enno Ohlebusch, Pascal Weber:
Edge minimization in de Bruijn graphs. Inf. Comput. 285(Part): 104795 (2022) - [c45]Jannik Olbrich, Enno Ohlebusch, Thomas Büchler:
On the Optimisation of the GSACA Suffix Array Construction Algorithm. SPIRE 2022: 99-113 - [p1]Timo Bingmann, Patrick Dinklage, Johannes Fischer, Florian Kurpicz, Enno Ohlebusch, Peter Sanders:
Scalable Text Index Construction. Algorithms for Big Data 2022: 252-284 - [i4]Jannik Olbrich, Enno Ohlebusch, Thomas Büchler:
On the Optimisation of the GSACA Suffix Array Construction Algorithm. CoRR abs/2206.12222 (2022) - 2021
- [c44]Thomas Büchler, Caroline Räther, Pascal Weber, Enno Ohlebusch:
Coordinate Systems for Pangenome Graphs based on the Level Function and Minimum Path Covers. BIOINFORMATICS 2021: 21-29 - 2020
- [j39]Thomas Büchler, Enno Ohlebusch:
An improved encoding of genetic variation in a Burrows-Wheeler transform. Bioinform. 36(5): 1413-1419 (2020) - [j38]Kadir Dede, Enno Ohlebusch:
Dynamic construction of pan-genome subgraphs. Open Comput. Sci. 10(1): 82-96 (2020) - [c43]Uwe Baier, Thomas Büchler, Enno Ohlebusch, Pascal Weber:
Edge Minimization in de Bruijn Graphs. DCC 2020: 223-232
2010 – 2019
- 2019
- [c42]Enno Ohlebusch, Pascal Weber:
On the Computation of Longest Previous Non-overlapping Factors. SPIRE 2019: 372-381 - [i3]Uwe Baier, Thomas Büchler, Enno Ohlebusch, Pascal Weber:
Edge minimization in de Bruijn graphs. CoRR abs/1911.00044 (2019) - 2018
- [c41]Enno Ohlebusch, Stefan Stauß, Uwe Baier:
Trickier XBWT Tricks. SPIRE 2018: 325-333 - 2017
- [j37]Uwe Baier, Timo Beller, Enno Ohlebusch:
Space-Efficient Parallel Construction of Succinct Representations of Suffix Tree Topologies. ACM J. Exp. Algorithmics 22 (2017) - [c40]Markus Mauer, Timo Beller, Enno Ohlebusch:
A Lempel-Ziv-style Compression Method for Repetitive Texts. Stringology 2017: 96-107 - 2016
- [j36]Timo Beller, Enno Ohlebusch:
A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. Algorithms Mol. Biol. 11: 20 (2016) - [j35]Timo Beller, Enno Ohlebusch:
Erratum to: A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. Algorithms Mol. Biol. 11: 28:1-28:2 (2016) - [j34]Uwe Baier, Timo Beller, Enno Ohlebusch:
Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform. Bioinform. 32(4): 497-504 (2016) - [i2]Timo Beller, Enno Ohlebusch:
A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. CoRR abs/1602.03333 (2016) - 2015
- [j33]Enno Ohlebusch, Timo Beller:
Alphabet-independent algorithms for finding context-sensitive repeats in linear time. J. Discrete Algorithms 34: 23-36 (2015) - [c39]Timo Beller, Enno Ohlebusch:
Efficient Construction of a Compressed de Bruijn Graph for Pan-Genome Analysis. CPM 2015: 40-51 - [c38]Uwe Baier, Timo Beller, Enno Ohlebusch:
Parallel Construction of Succinct Representations of Suffix Tree Topologies. SPIRE 2015: 234-245 - 2014
- [j32]Enno Ohlebusch, Timo Beller, Mohamed Ibrahim Abouelhoda:
Computing the Burrows-Wheeler transform of a string and its reverse in parallel. J. Discrete Algorithms 25: 21-33 (2014) - [c37]Enno Ohlebusch, Timo Beller:
Alphabet-Independent Algorithms for Finding Context-Sensitive Repeats in Linear Time. SPIRE 2014: 117-128 - 2013
- [b3]Enno Ohlebusch:
Bioinformatics Algorithms: Sequence Analysis, Genome Rearrangements, and Phylogenetic Reconstruction. Oldenbusch Verlag 2013, ISBN 978-3000413162, pp. 1-604 - [j31]Timo Beller, Simon Gog, Enno Ohlebusch, Thomas Schnattinger:
Computing the longest common prefix array based on the Burrows-Wheeler transform. J. Discrete Algorithms 18: 22-31 (2013) - [j30]Simon Gog, Enno Ohlebusch:
Compressed suffix trees: Efficient computation and storage of LCP-values. ACM J. Exp. Algorithmics 18 (2013) - [c36]Timo Beller, Maike Zwerger, Simon Gog, Enno Ohlebusch:
Space-Efficient Construction of the Burrows-Wheeler Transform. SPIRE 2013: 5-16 - 2012
- [j29]Thomas Schnattinger, Enno Ohlebusch, Simon Gog:
Bidirectional search in a string with wavelet trees and bidirectional matching statistics. Inf. Comput. 213: 13-22 (2012) - [c35]Enno Ohlebusch, Timo Beller, Mohamed Ibrahim Abouelhoda:
Computing the Burrows-Wheeler Transform of a String and Its Reverse. CPM 2012: 243-256 - [c34]Timo Beller, Katharina Berger, Enno Ohlebusch:
Space-Efficient Computation of Maximal and Supermaximal Repeats in Genome Sequences. SPIRE 2012: 99-110 - 2011
- [j28]Michael Arnold, Enno Ohlebusch:
Linear Time Algorithms for Generalizations of the Longest Common Substring Problem. Algorithmica 60(4): 806-818 (2011) - [c33]Simon Gog, Enno Ohlebusch:
Fast and Lightweight LCP-Array Construction Algorithms. ALENEX 2011: 25-34 - [c32]Enno Ohlebusch, Simon Gog:
Lempel-Ziv Factorization Revisited. CPM 2011: 15-26 - [c31]Timo Beller, Simon Gog, Enno Ohlebusch, Thomas Schnattinger:
Computing the Longest Common Prefix Array Based on the Burrows-Wheeler Transform. SPIRE 2011: 197-208 - 2010
- [j27]Enno Ohlebusch, Simon Gog:
Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem. Inf. Process. Lett. 110(3): 123-128 (2010) - [c30]Enno Ohlebusch, Simon Gog:
Space-efficient Genome Comparisons with Compressed Full-text Indexes. BICoB 2010: 19-24 - [c29]Thomas Schnattinger, Enno Ohlebusch, Simon Gog:
Bidirectional Search in a String with Wavelet Trees. CPM 2010: 40-50 - [c28]Enno Ohlebusch, Johannes Fischer, Simon Gog:
CST++. SPIRE 2010: 322-333 - [c27]Enno Ohlebusch, Simon Gog, Adrian Kügel:
Computing Matching Statistics and Maximal Exact Matches on Compressed Full-Text Indexes. SPIRE 2010: 347-358 - [i1]Simon Gog, Enno Ohlebusch:
Lightweight LCP-Array Construction in Linear Time. CoRR abs/1012.4263 (2010)
2000 – 2009
- 2009
- [c26]Enno Ohlebusch, Simon Gog:
A Compressed Enhanced Suffix Array Supporting Fast String Matching. SPIRE 2009: 51-62 - 2008
- [j26]Simon Gog, Martin Bader, Enno Ohlebusch:
GENESIS: genome evolution scenarios. Bioinform. 24(5): 711-712 (2008) - [j25]Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
CoCoNUT: an efficient system for the comparison and analysis of genomes. BMC Bioinform. 9 (2008) - [j24]Martin Bader, Mohamed Ibrahim Abouelhoda, Enno Ohlebusch:
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions. BMC Bioinform. 9 (2008) - [j23]Adrian Kügel, Enno Ohlebusch:
A space efficient solution to the frequent string mining problem for many databases. Data Min. Knowl. Discov. 17(1): 24-38 (2008) - [j22]Enno Ohlebusch, Stefan Kurtz:
Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences. J. Comput. Biol. 15(4): 357-377 (2008) - [c25]Adrian Kügel, Enno Ohlebusch:
A Space Efficient Solution to the Frequent String Mining Problem for Many Databases. ECML/PKDD (1) 2008: 16 - 2007
- [j21]Martin Bader, Enno Ohlebusch:
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions. J. Comput. Biol. 14(5): 615-636 (2007) - [j20]Enno Ohlebusch, Mohamed Ibrahim Abouelhoda, Kathrin Hockel:
A linear time algorithm for the inversion median problem in circular bacterial genomes. J. Discrete Algorithms 5(4): 637-646 (2007) - 2006
- [c24]Martin Bader, Enno Ohlebusch:
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions. RECOMB 2006: 563-577 - 2005
- [j19]Mohamed Ibrahim Abouelhoda, Enno Ohlebusch:
Chaining algorithms for multiple genome comparison. J. Discrete Algorithms 3(2-4): 321-341 (2005) - [c23]Enno Ohlebusch, Mohamed Ibrahim Abouelhoda, Kathrin Hockel, Jan Stallkamp:
The Median Problem for the Reversal Distance in Circular Bacterial Genomes. CPM 2005: 116-127 - [c22]Christian Wawra, Mohamed Ibrahim Abouelhoda, Enno Ohlebusch:
Efficient mapping of large cDNA/EST databases to genomes: A comparison of two different strategies. German Conference on Bioinformatics 2005: 29-43 - 2004
- [j18]Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms 2(1): 53-86 (2004) - [j17]Michael Beckstette, Jens T. Mailänder, Richard J. Marhöfer, Alexander Sczyrba, Enno Ohlebusch, Robert Giegerich, Paul M. Selzer:
Genlight: Interactive high-throughput sequence analysis and comparative genomics. J. Integr. Bioinform. 1(1) (2004) - 2003
- [j16]Patrick S. G. Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak:
An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings Bioinform. 4(2): 105-123 (2003) - [c21]Mohamed Ibrahim Abouelhoda, Enno Ohlebusch:
Multiple Genome Alignment: Chaining Algorithms Revisited. CPM 2003: 1-16 - [c20]Mohamed Ibrahim Abouelhoda, Enno Ohlebusch:
A Local Chaining Algorithm and Its Applications in Comparative Genomics. WABI 2003: 1-16 - 2002
- [b2]Enno Ohlebusch:
Advanced topics in term rewriting. Springer 2002, ISBN 978-0-387-95250-5, pp. I-XV, 1-414 - [j15]Alfons Geser, Aart Middeldorp, Enno Ohlebusch, Hans Zantema:
Relative Undecidability in Term Rewriting: I. The Termination Hierarchy. Inf. Comput. 178(1): 101-131 (2002) - [j14]Alfons Geser, Aart Middeldorp, Enno Ohlebusch, Hans Zantema:
Relative Undecidability in Term Rewriting: II. The Confluence Hierarchy. Inf. Comput. 178(1): 132-148 (2002) - [j13]Enno Ohlebusch:
Hierarchical termination revisited. Inf. Process. Lett. 84(4): 207-214 (2002) - [j12]Jürgen Giesl, Thomas Arts, Enno Ohlebusch:
Modular Termination Proofs for Rewriting Using Dependency Pairs. J. Symb. Comput. 34(1): 21-58 (2002) - [c19]Michael Höhl, Stefan Kurtz, Enno Ohlebusch:
Efficient multiple genome alignment. ISMB 2002: 312-320 - [c18]Mohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz:
Optimal Exact Strring Matching Based on Suffix Arrays. SPIRE 2002: 31-43 - [c17]Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
The Enhanced Suffix Array and Its Applications to Genome Analysis. WABI 2002: 449-463 - [c16]Enno Ohlebusch:
Conditional Term Graph Rewriting with Indirect Sharing. TERMGRAPH 2002: 87-100 - 2001
- [j11]Enno Ohlebusch:
Termination of Logic Programs: Transformational Methods Revisited. Appl. Algebra Eng. Commun. Comput. 12(1/2): 73-116 (2001) - [j10]Enno Ohlebusch:
Implementing conditional term rewriting by graph rewriting. Theor. Comput. Sci. 262(1): 311-331 (2001) - 2000
- [j9]Enno Ohlebusch:
A uniform framework for term and graph rewriting applied to combined systems. Inf. Process. Lett. 73(1-2): 53-59 (2000) - [c15]Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich:
Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238 - [c14]Enno Ohlebusch, Claus Claves, Claude Marché:
TALP: A Tool for the Termination Analysis of Logic Programs. RTA 2000: 270-273
1990 – 1999
- 1999
- [j8]Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing:
Semantic Matching for Left-Linear Convergent Rewrite Systems. J. Funct. Log. Program. 1999(11) (1999) - [c13]Enno Ohlebusch:
On Quasi-Reductive and Quasi-Simplifying Deterministic Conditional Rewrite Systems. Fuji International Symposium on Functional and Logic Programming 1999: 179-193 - [c12]Enno Ohlebusch:
Transforming Conditional Rewrite Systems with Extra Variables into Unconditional Systems. LPAR 1999: 111-130 - 1998
- [j7]Enno Ohlebusch:
Modularity of Termination for Disjoint Term Graph Rewrite Systems: A Simple Proof. Bull. EATCS 66: 171-177 (1998) - [c11]Jürgen Giesl, Enno Ohlebusch:
Pushing the Frontiers of Combining Rewrite Systems Farther Outwards. FroCoS 1998: 141-160 - [c10]Enno Ohlebusch:
Church-Rosser Theorems for Abstract Reduction Modulo an Equivalence Relation. RTA 1998: 17-31 - 1997
- [j6]Enno Ohlebusch, Esko Ukkonen:
On the Equivalence Problem for E-Pattern Languages. Theor. Comput. Sci. 186(1-2): 231-248 (1997) - [c9]Enno Ohlebusch:
Conditional Term Graph Rewriting. ALP/HOA 1997: 144-158 - [c8]Enno Ohlebusch:
A Filter Method for the Weighted Local Similarity Search Problem. CPM 1997: 191-205 - [c7]Alfons Geser, Aart Middeldorp, Enno Ohlebusch, Hans Zantema:
Relative Undecidability in the Termination Hierarchy of Single Rewrite Rules. TAPSOFT 1997: 237-248 - 1996
- [c6]Alfons Geser, Aart Middeldorp, Enno Ohlebusch, Hans Zantema:
Relative Undecidability in Term Rewriting. CSL 1996: 150-166 - [c5]Enno Ohlebusch, Esko Ukkonen:
On the Equivalence Problem for E-Pattern Languages. MFCS 1996: 457-468 - 1995
- [j5]Enno Ohlebusch:
Termination is not Modular for Confluent Variable-Preserving Term Rewriting Systems. Inf. Process. Lett. 53(4): 223-228 (1995) - [j4]Enno Ohlebusch:
Modular Properties of Composable Term Rewriting Systems. J. Symb. Comput. 20(1): 1-41 (1995) - [c4]Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing:
A New Strategy for Semantic Matching. PLILP 1995: 81-96 - 1994
- [b1]Enno Ohlebusch:
Modular properties of composable term rewriting systems. Bielefeld University, Germany, 1994, pp. 1-185 - [j3]Enno Ohlebusch:
On the Modularity of Termination of Term Rewriting Systems. Theor. Comput. Sci. 136(2): 333-360 (1994) - [c3]Enno Ohlebusch:
On the Modularity of Confluence of Constructor-Sharing Term Rewriting Systems. CAAP 1994: 261-275 - [c2]Enno Ohlebusch:
Modular Properties of Constructor-Sharing Conditional Term Rewriting Systems. CTRS 1994: 296-315 - 1993
- [j2]Enno Ohlebusch:
A simple proof of sufficient conditions for the termination of the disjoint union of term rewriting systems. Bull. EATCS 50: 223-228 (1993) - 1992
- [c1]Enno Ohlebusch:
Combinations of Simplifying Conditional Term Rewriting Systems. CTRS 1992: 113-127 - 1991
- [j1]Robert Giegerich, Enno Ohlebusch:
An Implicit Representation of Infinite Sequences of Terms. Bull. EATCS 43: 174-182 (1991)
Coauthor Index
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