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ORCIDJaime I. Dávila
Person information
- affiliation: University of Washington, Seattle, WA, USA
- affiliation (former): Mayo Clinic, Health Sciences Research, Rochester, MN, USA
- affiliation (former): University of Connecticut, Department of Computer Science and Engineering, CT, USA
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Journal Articles
- 2023
[j7]Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang, Jaime I. Dávila
:
Excerno: Using Mutational Signatures in Sequencing Data to Filter False Variants Caused by Clinical Archival. J. Comput. Biol. 30(4): 366-375 (2023)- 2021
- [j6]Tianshu Feng, Jaime I. Dávila, Yuanhang Liu, Sangdi Lin, Shuai Huang, Chen Wang:
Semi-Supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1620-1631 (2021) - 2014
- [j5]Chen Wang, Jaime I. Dávila, Saurabh Baheti, Aditya Bhagwate, Xue Wang, Jean-Pierre A. Kocher, Susan L. Slager, Andrew L. Feldman, Anne J. Novak, James R. Cerhan, E. Aubrey Thompson, Yan W. Asmann:
RVboost: RNA-seq variants prioritization using a boosting method. Bioinform. 30(23): 3414-3416 (2014) - [j4]Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher:
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. BMC Bioinform. 15: 224 (2014) - 2007
- [j3]Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran:
Fast and Practical Algorithms for Planted (l, d) Motif Search. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 544-552 (2007) - 2005
- [j2]Jaime I. Dávila, Sanguthevar Rajasekaran:
Randomized Sorting On The Pops Network. Int. J. Found. Comput. Sci. 16(1): 105-116 (2005) - [j1]Sanguthevar Rajasekaran, Jaime I. Dávila:
Packet routing and selection on the POPS network. J. Parallel Distributed Comput. 65(8): 927-933 (2005)
Conference and Workshop Papers
- 2021
- [c8]Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang, Jaime I. Dávila:
Excerno: Filtering Mutations Caused by the Clinical Archival Process in Sequencing Data. ICCABS 2021: 29-37 - 2017
- [c7]Jaime I. Dávila:
Challenges of using RNA-seq in the clinical setting. ICCABS 2017: 1 - 2015
- [c6]Mia D. Champion, Ryan A. Hlady, Huihuang Yan, Jared Evans, Jeff Nie, Jeong-Heon Lee, James M. Bogenberger, Kannabiran Nandakumar, Jaime I. Dávila, Raymond M. Moore, Asha A. Nair, Daniel R. O'Brien, Yuan-Xiao Zhu, K. Martin Kortüm, Tamas Ordog, Zhiguo Zhang, Richard W. Joseph, A. Keith Stewart, Jean-Pierre A. Kocher, Eric Jonasch, Keith D. Robertson, Raoul Tibes, Thai H. Ho:
Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing. BIOINFORMATICS 2015: 163-170 - 2007
- [c5]Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran:
Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data. WABI 2007: 302-309 - 2006
- [c4]Jaime I. Dávila, Sanguthevar Rajasekaran:
Extending Pattern Branching to Handle Challenging Instances. BIBE 2006: 65-69 - [c3]Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran:
Space and Time Efficient Algorithms for Planted Motif Search. International Conference on Computational Science (2) 2006: 822-829 - 2004
- [c2]Jaime I. Dávila, Sanguthevar Rajasekaran:
Randomized Sorting on the POPS Network. PDCS 2004: 45-50 - [c1]Sanguthevar Rajasekaran, Jaime I. Dávila:
A Fundamental Problem in Computer and Communication. ICPADS 2004: 81-
Parts in Books or Collections
- 2018
- [p1]Sudha Balla, Jaime I. Dávila, Marius Nicolae, Sanguthevar Rajasekaran:
Approximation Algorithms for the Primer Selection, PlantedMotif Search, and Related Problems. Handbook of Approximation Algorithms and Metaheuristics (2) 2018
Reference Works
- 2007
- [r2]Sudha Balla, Jaime I. Dávila, Sanguthevar Rajasekaran:
Approximation Algorithms for the Primer Selection, Planted Motif Search, and Related Problems. Handbook of Approximation Algorithms and Metaheuristics 2007 - [r1]Sanguthevar Rajasekaran, Jaime I. Dávila:
Randomized Packet Routing, Selection, and Sorting on the POPS Network. Handbook of Parallel Computing 2007
Coauthor Index
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