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ORCIDYinglei Song
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Books and Theses
- 2006
[b1]Yinglei Song:
Effective models and efficient algorithms for structural bioinformatics. University of Georgia, Athens, GA, USA, 2006
Journal Articles
- 2025
- [j27]Xuemeng Zhao, Yinglei Song:
Image based information hiding via minimization of entropy and randomization. Inf. Sci. 689: 121514 (2025) - 2024
- [j26]Yuan Cao, Yinglei Song:
Color Image Encryption Based on an Evolutionary Codebook and Chaotic Systems. Entropy 26(7): 597 (2024) - 2023
- [j25]Xinpeng Man, Yinglei Song:
Encryption of Color Images with an Evolutionary Framework Controlled by Chaotic Systems. Entropy 25(4): 631 (2023) - 2022
- [j24]Yinglei Song, Jia Song, Junfeng Qu:
Optimal image based information hiding with one-dimensional chaotic systems and dynamic programming. Int. Arab J. Inf. Technol. 19(1): 1-10 (2022) - 2021
- [j23]Guoliang Li, Jinhong Sun, Yinglei Song
, Junfeng Qu, Zhiyu Zhu, Mohammad Reza Khosravi:
Real-time classification of brain tumors in MRI images with a convolutional operator-based hidden Markov model. J. Real Time Image Process. 18(4): 1207-1219 (2021) - [j22]Yinglei Song, Junfeng Qu, Chunmei Liu:
Real-time registration of remote sensing images with a Markov chain model. J. Real Time Image Process. 18(5): 1527-1540 (2021) - [j21]Yinglei Song, Junfeng Qu:
Real-time segmentation of remote sensing images with a combination of clustering and Bayesian approaches. J. Real Time Image Process. 18(5): 1541-1554 (2021) - 2020
- [j20]Guoliang Li, Mohammad N. A. Rana, Jinhong Sun, Yinglei Song, Junfeng Qu:
Real-time image enhancement with efficient dynamic programming. Multim. Tools Appl. 79(41-42): 30883-30903 (2020) - 2018
- [j19]Yinglei Song, Yongzhong Li, Junfeng Qu:
A New Approach for Supervised Dimensionality Reduction. Int. J. Data Warehous. Min. 14(4): 20-37 (2018) - 2016
- [j18]Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai:
A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae 145(2): 151-170 (2016) - 2015
- [j17]Yinglei Song, Chunmei Liu, Yongzhong Li:
A New Parameterized Algorithm for Predicting the Secondary Structure of RNA Sequences Including Pseudoknots. Comput. J. 58(11): 3114-3125 (2015) - [j16]Yinglei Song:
On the independent set problem in random graphs. Int. J. Comput. Math. 92(11): 2233-2242 (2015) - [j15]Yinglei Song, Menghong Yu:
On finding the longest antisymmetric path in directed acyclic graphs. Inf. Process. Lett. 115(2): 377-381 (2015) - [j14]Yinglei Song, Albert Y. Chi:
Peptide sequencing via graph path decomposition. Inf. Sci. 301: 262-270 (2015) - [j13]Yinglei Song, Albert Y. Chi:
A New Approach for Parameter Estimation in the Sequence-structure Alignment of Non-coding RNAs. J. Inf. Sci. Eng. 31(2): 593-607 (2015) - [j12]Yinglei Song, Chunmei Liu, Zhi Wang:
A Machine Learning Approach for Accurate Annotation of Noncoding RNAs. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 551-559 (2015) - 2014
- [j11]Yinglei Song:
An improved parameterized algorithm for the independent feedback vertex set problem. Theor. Comput. Sci. 535: 25-30 (2014) - 2013
- [j10]Chunmei Liu, Dongsheng Che, Xumin Liu, Yinglei Song:
Applications of Machine Learning in Genomics and Systems Biology. Comput. Math. Methods Medicine 2013: 587492:1 (2013) - 2011
- [j9]Chunmei Liu, Yinglei Song:
Parameterized complexity and inapproximability of dominating set problem in chordal and near chordal graphs. J. Comb. Optim. 22(4): 684-698 (2011) - 2010
- [j8]Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu, Gurdeep S. Hura:
Alignment of multiple proteins with an ensemble of Hidden Markov Models. Int. J. Data Min. Bioinform. 4(1): 60-71 (2010) - 2009
- [j7]Chunmei Liu, Yinglei Song:
Parameterized dominating set problem in chordal graphs: complexity and lower bound. J. Comb. Optim. 18(1): 87-97 (2009) - 2008
- [j6]Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A. Rosamond, Yinglei Song:
Parameterized Complexity and Biopolymer Sequence Comparison. Comput. J. 51(3): 270-291 (2008) - [j5]Chunmei Liu, Yinglei Song, Legand L. Burge III:
Parameterized lower bound and inapproximability of polylogarithmic string barcoding. J. Comb. Optim. 16(1): 39-49 (2008) - 2006
- [j4]Yinglei Song, Chunmei Liu, Russell L. Malmberg, Congzhou He, Liming Cai:
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots. Int. J. Bioinform. Res. Appl. 2(3): 289-304 (2006) - [j3]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 423-432 (2006) - 2005
- [j2]Yinglei Song, Jizhen Zhao, Chunmei Liu, Kan Liu, Russell L. Malmberg, Liming Cai:
RNA Structural Homology Search with a Succinct Stochastic Grammar Model. J. Comput. Sci. Technol. 20(4): 454-464 (2005) - [j1]Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai:
Profiling and Searching for RNA Pseudoknot Structures in Genomes. Trans. Comp. Sys. Biology 2: 37-47 (2005)
Conference and Workshop Papers
- 2023
- [c23]Liguo Zhou, Yinglei Song, Yichao Gao, Zhou Yu, Michael Sodamin, Hongshen Liu, Liang Ma, Lian Liu, Hao Liu, Yang Liu, Haichuan Li, Guang Chen, Alois Knoll:
GarchingSim: An Autonomous Driving Simulator with Photorealistic Scenes and Minimalist Workflow. ITSC 2023: 4227-4232 - 2016
- [c22]Junfeng Qu, Yinglei Song, Yong Wei:
Design patterns applied for game design patterns. SNPD 2016: 351-356 - 2015
- [c21]Yinglei Song, Albert Y. Chi, Junfeng Qu:
A Graph Theoretic Approach for the Feature Extraction of Transcription Factor Binding Sites. ICIC (2) 2015: 445-455 - [c20]Yinglei Song, Junfeng Qu, Chunmei Liu:
Rapid Annotation of Non-coding RNA Structures with a Parameterized Filtering Approach. ICIC (2) 2015: 542-553 - 2014
- [c19]Yinglei Song, Changbao Wang, Junfeng Qu:
A Parameterized Algorithm for Predicting Transcription Factor Binding Sites. ICIC (3) 2014: 339-350 - [c18]Yinglei Song, Junfeng Qu:
A New Graph Theoretic Approach for Protein Threading. ICIC (3) 2014: 501-507 - [c17]Junfeng Qu, Yong Wei, Yinglei Song:
Design patterns applied for networked first person shooting game programming. SNPD 2014: 1-6 - 2009
- [c16]Dongsheng Che, Haibao Tang, Yinglei Song:
Haplotype inference using a genetic algorithm. CIBCB 2009: 31-37 - [c15]Junfeng Qu, Muhammad A. Rahman, Yinglei Song, Lei Zhu, Yong Wei, Weihu Hong, Hamid R. Arabnia:
PaperGuard: A Support Vector Machine Approach for Screening Machine Generated Papers. IKE 2009: 433-438 - 2008
- [c14]Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu:
Clustering for DNA Microarray Data Analysis with a Graph Cut Based Algorithm. ICMLA 2008: 595-598 - [c13]Junfeng Qu, Yinglei Song, Hamid R. Arabnia, Byron Jeff:
Knowledge Retrieval in Financial Domain. IKE 2008: 140-144 - 2007
- [c12]Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu:
Alignment of Multiple Proteins with an Ensemble of Hidden Markov Models. ICMLA 2007: 594-599 - [c11]Junfeng Qu, Hamid R. Arabnia, Yinglei Song, Khaled Rasheed, Jack Houston:
Time Series Similarity Matching with a New Distance Measure. IKE 2007: 183-189 - [c10]Chunmei Liu, Yinglei Song, Louis W. Shapiro:
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. WABI 2007: 310-322 - 2006
- [c9]Chunmei Liu, Yinglei Song:
Exact Algorithms for Finding the Minimum Independent Dominating Set in Graphs. ISAAC 2006: 439-448 - [c8]Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai:
Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) 2006: 307-313 - [c7]Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai:
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing 2006: 255-266 - [c6]Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai:
Phylogenetic Network Inferences Through Efficient Haplotyping. WABI 2006: 68-79 - 2005
- [c5]Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai:
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. CSB 2005: 223-234 - [c4]Dongsheng Che, Yinglei Song, Khaled Rasheed:
MDGA: motif discovery using a genetic algorithm. GECCO 2005: 447-452 - [c3]Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai:
Profiling and Searching for RNA Pseudoknot Structures in Genomes. International Conference on Computational Science (2) 2005: 968-975 - [c2]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388 - 2003
- [c1]Mehmet Celenk, Yinglei Song, Limin Ma, Min Zhou:
Shape classification of malignant lymphomas and leukemia by morphological watersheds and ARMA modeling. Medical Imaging: Image Processing 2003
Informal and Other Publications
- 2024
- [i7]Liguo Zhou, Yinglei Song, Yichao Gao, Zhou Yu, Michael Sodamin, Hongshen Liu, Liang Ma, Lian Liu, Hao Liu, Yang Liu, Haichuan Li, Guang Chen, Alois Knoll:
GarchingSim: An Autonomous Driving Simulator with Photorealistic Scenes and Minimalist Workflow. CoRR abs/2401.15803 (2024) - 2015
- [i6]Yinglei Song:
Time and Space Efficient Algorithms for RNA Folding with the Four-Russians Technique. CoRR abs/1503.05670 (2015) - [i5]Yinglei Song:
On the Dominating Set Problem in Random Graphs. CoRR abs/1510.07188 (2015) - [i4]Yinglei Song:
Lower Bounds for the Domination Numbers of Connected Graphs without Short Cycles. CoRR abs/1512.06338 (2015) - 2014
- [i3]Yinglei Song:
On the Induced Matching Problem in Hamiltonian Bipartite Graphs. CoRR abs/1412.0864 (2014) - 2013
- [i2]Yinglei Song:
An Improved Parameterized Algorithm for the Independent Feedback Vertex Set Problem. CoRR abs/1308.0085 (2013) - [i1]Yinglei Song:
On the Independent Set and Common Subgraph Problems in Random Graphs. CoRR abs/1308.1556 (2013)
Coauthor Index
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