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2020 – today
- 2024
[j15]Clara Lage
, Nelly Pustelnik, Jean-Michel Arbona, Benjamin Audit:
Space-Scale Hybrid Continuous-Discrete Sliding Frank-Wolfe Method. IEEE Signal Process. Lett. 31: 830-834 (2024)- [i2]Myriam Bontonou, Anaïs Haget, Maria Boulougouri, Benjamin Audit, Pierre Borgnat, Jean-Michel Arbona:
A Comparative Analysis of Gene Expression Profiling by Statistical and Machine Learning Approaches. CoRR abs/2402.00926 (2024) - 2023
- [j14]Jean-Michel Arbona, Hadi Kabalane, Jeremy Barbier, Arach Goldar, Olivier Hyrien, Benjamin Audit:
Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths. PLoS Comput. Biol. 19(5) (2023) - [i1]Myriam Bontonou, Anaïs Haget, Maria Boulougouri, Jean-Michel Arbona, Benjamin Audit, Pierre Borgnat:
Studying Limits of Explainability by Integrated Gradients for Gene Expression Models. CoRR abs/2303.11336 (2023)
2010 – 2019
- 2017
- [j13]Rasha E. Boulos, Nicolas Tremblay, Alain Arneodo, Pierre Borgnat, Benjamin Audit:
Multi-scale structural community organisation of the human genome. BMC Bioinform. 18(1): 209:1-209:13 (2017) - 2015
- [j12]Hanna Julienne, Benjamin Audit, Alain Arneodo:
Embryonic Stem Cell Specific "Master" Replication Origins at the Heart of the Loss of Pluripotency. PLoS Comput. Biol. 11(2) (2015) - 2014
- [j11]Lamia Zaghloul, Guénola Drillon, Rasha E. Boulos, Françoise Argoul, Claude Thermes, Alain Arneodo, Benjamin Audit:
Large replication skew domains delimit GC-poor gene deserts in human. Comput. Biol. Chem. 53: 153-165 (2014) - 2013
- [j10]Hanna Julienne, Azedine Zoufir, Benjamin Audit, Alain Arneodo:
Human Genome Replication Proceeds through Four Chromatin States. PLoS Comput. Biol. 9(10) (2013) - [c2]Benjamin Audit, Antoine Baker, Rasha E. Boulos, Hanna Julienne, Alain Arneodo, C. L. Chen, Yves d'Aubenton-Carafa, Claude Thermes, Arach Goldar, Guillaume Guilbaud, Aurélien Rappailles, Olivier Hyrien:
Relating mammalian replication program to large-scale chromatin folding. BCB 2013: 799 - 2012
- [j9]Antoine Baker, Benjamin Audit, Chun-Long Chen, Benoit Moindrot, Antoine Leleu, Guillaume Guilbaud, Aurélien Rappailles, Cédric Vaillant, Arach Goldar, Fabien Mongelard, Yves D'Aubenton-Carafa, Olivier Hyrien, Claude Thermes, Alain Arneodo:
Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines. PLoS Comput. Biol. 8(4) (2012) - 2011
- [j8]Guillaume Guilbaud, Aurélien Rappailles, Antoine Baker, Chun-Long Chen, Alain Arneodo, Arach Goldar, Yves D'Aubenton-Carafa, Claude Thermes, Benjamin Audit, Olivier Hyrien:
Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome. PLoS Comput. Biol. 7(12) (2011)
2000 – 2009
- 2009
- [r1]Alain Arneodo, Benjamin Audit, Edward-Benedict Brodie of Brodie, Samuel Nicolay, Marie Touchon, Yves D'Aubenton-Carafa, Maxime Huvet, Claude Thermes:
Fractals and Wavelets: What Can We Learn on Transcription and Replication from Wavelet-Based Multifractal Analysis of DNA Sequences. Encyclopedia of Complexity and Systems Science 2009: 3893-3924 - 2008
- [j7]Alain Arneodo, Benjamin Audit, Pierre Kestener, Stéphane G. Roux:
Wavelet-based multifractal analysis. Scholarpedia 3(3): 4103 (2008) - 2007
- [j6]Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis:
CORRIE: enzyme sequence annotation with confidence estimates. BMC Bioinform. 8(S-4) (2007) - 2006
- [c1]Alain Arneodo, Yves D'Aubenton-Carafa, Benjamin Audit, Edward-Benedict Brodie, Samuel Nicolay, Philippe Saint-Jean, Claude Thermes, Marie Touchon, Cédric Vaillant:
Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes. EUSIPCO 2006: 1-6 - 2005
- [j5]Leon Goldovsky, Paul J. Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis:
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinform. 21(19): 3806-3810 (2005) - [j4]Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit:
Probabilistic annotation of protein sequences based on functional classifications. BMC Bioinform. 6: 302 (2005) - 2003
- [j3]Paul J. Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis:
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics. Bioinform. 19(11): 1451-1452 (2003) - 2002
- [j2]Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis:
Modeling the percolation of annotation errors in a database of protein sequences. Bioinform. 18(12): 1641-1649 (2002) - [j1]Benjamin Audit, Emmanuel Bacry, Jean-François Muzy, Alain Arneodo:
Wavelet-based estimators of scaling behavior. IEEE Trans. Inf. Theory 48(11): 2938-2954 (2002)
Coauthor Index
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