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Chao Shen 0008
Person information
- affiliation: Zhejiang University, College of Pharmaceutical Sciences, Hangzhou, China
- affiliation: CarbonSilicon AI Technology Co., Ltd, Hangzhou, Zhejiang, China
Other persons with the same name
- Chao Shen — disambiguation page
- Chao Shen 0001
— Xi'an Jiaotong University, School of Electronic and Information Engineering, MOE Key Laboratory for Intelligent Networks and Network Security, China
- Chao Shen 0002
— Beijing University of Technology, College of Electronic Information and Control Engineering, China (and 1 more)
- Chao Shen 0003
— University of Victoria, Department of Mechanical Engineering / IESVic, BC, Canada
- Chao Shen 0004
— Beijing Jiaotong University, Beijing Engineering Research Center of High-Speed Railway Broadband Mobile Communications, China (and 3 more)
- Chao Shen 0005 — Florida International University, School of Computing and Information Sciences, Miami, FL, USA
- Chao Shen 0006
— Hunan University, College of Electrical and Information Engineering, Changsha, China
- Chao Shen 0007 — Shanghai University, School of Computer Engineering and Science, China
- Chao Shen 0009
— Fudan University, Key Laboratory of EMW Information, MoE, Shanghai, China
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2020 – today
- 2024
- [j24]Huifeng Zhao, Dejun Jiang
, Chao Shen
, Jintu Zhang
, Xujun Zhang, Xiaorui Wang
, Dou Nie, Tingjun Hou
, Yu Kang
:
Comprehensive Evaluation of 10 Docking Programs on a Diverse Set of Protein-Cyclic Peptide Complexes. J. Chem. Inf. Model. 64(6): 2112-2124 (2024) - [j23]Chao Shen, Jianfei Song, Chang-Yu Hsieh, Dong-Sheng Cao, Yu Kang, Wenling Ye, Zhenxing Wu, Jike Wang, Odin Zhang, Xujun Zhang, Hao Zeng, Heng Cai, Yu Chen, Linkang Chen, Hao Luo, Xinda Zhao, Tianye Jian, Tong Chen, Dejun Jiang, Mingyang Wang, Qing Ye, Jialu Wu, Hongyan Du, Hui Shi, Yafeng Deng, Tingjun Hou:
DrugFlow: An AI-Driven One-Stop Platform for Innovative Drug Discovery. J. Chem. Inf. Model. 64(14): 5381-5391 (2024) - [i1]Jike Wang, Rui Qin, Mingyang Wang, Meijing Fang, Yangyang Zhang, Yuchen Zhu, Qun Su, Qiaolin Gou, Chao Shen, Odin Zhang, Zhenxing Wu, Dejun Jiang, Xujun Zhang, Huifeng Zhao, Xiaozhe Wan, Zhourui Wu, Liwei Liu, Yu Kang, Chang-Yu Hsieh, Tingjun Hou:
Token-Mol 1.0: Tokenized drug design with large language model. CoRR abs/2407.07930 (2024) - 2023
- [j22]Dong Wang, Zhenxing Wu, Chao Shen
, Lingjie Bao, Hao Luo, Zhe Wang
, Hucheng Yao, De-Xin Kong
, Cheng Luo
, Tingjun Hou
:
Learning with uncertainty to accelerate the discovery of histone lysine-specific demethylase 1A (KDM1A/LSD1) inhibitors. Briefings Bioinform. 24(1) (2023) - [j21]Shukai Gu, Chao Shen
, Jiahui Yu, Hong Zhao, Huanxiang Liu
, Liwei Liu, Rong Sheng, Lei Xu, Zhe Wang
, Tingjun Hou
, Yu Kang:
Can molecular dynamics simulations improve predictions of protein-ligand binding affinity with machine learning? Briefings Bioinform. 24(2) (2023) - [j20]Xujun Zhang, Chao Shen
, Tianyue Wang, Yafeng Deng, Yu Kang
, Dan Li, Tingjun Hou
, Peichen Pan
:
ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions. Briefings Bioinform. 24(5) (2023) - [j19]Xujun Zhang, Chao Shen, Dejun Jiang, Jintu Zhang, Qing Ye, Lei Xu, Tingjun Hou, Peichen Pan
, Yu Kang:
TB-IECS: an accurate machine learning-based scoring function for virtual screening. J. Cheminformatics 15(1): 63 (2023) - [j18]Gaoqi Weng
, Xuanyan Cai, Dong-Sheng Cao
, Hongyan Du, Chao Shen, Yafeng Deng, Qiaojun He, Bo Yang, Dan Li, Tingjun Hou
:
PROTAC-DB 2.0: an updated database of PROTACs. Nucleic Acids Res. 51(D1): 1367-1372 (2023) - [j17]Odin Zhang, Jintu Zhang, Jieyu Jin, Xujun Zhang, Renling Hu
, Chao Shen
, Hanqun Cao, Hongyan Du, Yu Kang
, Yafeng Deng, Furui Liu
, Guangyong Chen
, Chang-Yu Hsieh
, Tingjun Hou
:
ResGen is a pocket-aware 3D molecular generation model based on parallel multiscale modelling. Nat. Mac. Intell. 5(9): 1020-1030 (2023) - [j16]Xujun Zhang, Odin Zhang, Chao Shen, Wanglin Qu, Shicheng Chen, Hanqun Cao, Yu Kang
, Zhe Wang, Ercheng Wang
, Jintu Zhang, Yafeng Deng, Furui Liu, Tianyue Wang, Hongyan Du, Langcheng Wang, Peichen Pan
, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou:
Efficient and accurate large library ligand docking with KarmaDock. Nat. Comput. Sci. 3(9): 789-804 (2023) - 2022
- [j15]Gaoang Wang, Jiahui Yu, Hongyan Du, Chao Shen, Xujun Zhang, Yifei Liu, Yangyang Zhang, Dong-Sheng Cao
, Peichen Pan
, Tingjun Hou:
VGSC-DB: an online database of voltage-gated sodium channels. J. Cheminformatics 14(1): 75 (2022) - 2021
- [j14]Chao Shen, Ye Hu, Zhe Wang
, Xujun Zhang, Haiyang Zhong, Gaoang Wang, Xiaojun Yao, Lei Xu, Dong-Sheng Cao
, Tingjun Hou:
Can machine learning consistently improve the scoring power of classical scoring functions? Insights into the role of machine learning in scoring functions. Briefings Bioinform. 22(1): 497-514 (2021) - [j13]Chao Shen, Ye Hu, Zhe Wang
, Xujun Zhang, Jinping Pang, Gaoang Wang, Haiyang Zhong, Lei Xu, Dong-Sheng Cao
, Tingjun Hou:
Beware of the generic machine learning-based scoring functions in structure-based virtual screening. Briefings Bioinform. 22(3) (2021) - [j12]Guo-Li Xiong
, Wenling Ye, Chao Shen, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao
:
Improving structure-based virtual screening performance via learning from scoring function components. Briefings Bioinform. 22(3) (2021) - [j11]Zhenxing Wu, Minfeng Zhu, Yu Kang, Elaine Lai-Han Leung, Tailong Lei
, Chao Shen, Dejun Jiang, Zhe Wang
, Dong-Sheng Cao
, Tingjun Hou:
Do we need different machine learning algorithms for QSAR modeling? A comprehensive assessment of 16 machine learning algorithms on 14 QSAR data sets. Briefings Bioinform. 22(4) (2021) - [j10]Chao Shen, Gaoqi Weng, Xujun Zhang, Elaine Lai-Han Leung, Xiaojun Yao, Jinping Pang, Xin Chai, Dan Li, Ercheng Wang
, Dong-Sheng Cao
, Tingjun Hou
:
Accuracy or novelty: what can we gain from target-specific machine-learning-based scoring functions in virtual screening? Briefings Bioinform. 22(5) (2021) - [j9]Qing Ye
, Xin Chai, Dejun Jiang, Liu Yang, Chao Shen, Xujun Zhang, Dan Li, Dong-Sheng Cao
, Tingjun Hou
:
Identification of active molecules against Mycobacterium tuberculosis through machine learning. Briefings Bioinform. 22(5) (2021) - [j8]Xujun Zhang, Chao Shen, Xueying Guo, Zhe Wang
, Gaoqi Weng, Qing Ye, Gaoang Wang, Qiaojun He, Bo Yang, Dong-Sheng Cao
, Tingjun Hou
:
ASFP (Artificial Intelligence based Scoring Function Platform): a web server for the development of customized scoring functions. J. Cheminformatics 13(1): 6 (2021) - [j7]Dejun Jiang, Zhenxing Wu, Chang-Yu Hsieh, Guangyong Chen, Ben Liao, Zhe Wang
, Chao Shen, Dong-Sheng Cao
, Jian Wu, Tingjun Hou
:
Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models. J. Cheminformatics 13(1): 12 (2021) - [j6]Chao Shen, Xueping Hu
, Junbo Gao, Xujun Zhang, Haiyang Zhong, Zhe Wang
, Lei Xu, Yu Kang, Dong-Sheng Cao
, Tingjun Hou
:
The impact of cross-docked poses on performance of machine learning classifier for protein-ligand binding pose prediction. J. Cheminformatics 13(1): 81 (2021) - [j5]Gaoqi Weng, Chao Shen, Dong-Sheng Cao
, Junbo Gao, Xiaowu Dong, Qiaojun He, Bo Yang, Dan Li, Jian Wu, Tingjun Hou
:
PROTAC-DB: an online database of PROTACs. Nucleic Acids Res. 49(Database-Issue): D1381-D1387 (2021) - 2020
- [j4]Chao Shen, Zhe Wang
, Xiaojun Yao, Youyong Li, Tailong Lei, Ercheng Wang
, Lei Xu, Feng Zhu
, Dan Li, Tingjun Hou:
Comprehensive assessment of nine docking programs on type II kinase inhibitors: prediction accuracy of sampling power, scoring power and screening power. Briefings Bioinform. 21(1): 282-297 (2020) - [j3]Dejun Jiang, Tailong Lei, Zhe Wang
, Chao Shen, Dong-Sheng Cao
, Tingjun Hou
:
ADMET evaluation in drug discovery. 20. Prediction of breast cancer resistance protein inhibition through machine learning. J. Cheminformatics 12(1): 16 (2020) - [j2]Wenling Ye, Chao Shen, Guo-Li Xiong
, Jun-Jie Ding, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao
:
Improving Docking-Based Virtual Screening Ability by Integrating Multiple Energy Auxiliary Terms from Molecular Docking Scoring. J. Chem. Inf. Model. 60(9): 4216-4230 (2020)
2010 – 2019
- 2019
- [j1]Zhenxing Wu, Tailong Lei
, Chao Shen, Zhe Wang
, Dong-Sheng Cao
, Tingjun Hou
:
ADMET Evaluation in Drug Discovery. 19. Reliable Prediction of Human Cytochrome P450 Inhibition Using Artificial Intelligence Approaches. J. Chem. Inf. Model. 59(11): 4587-4601 (2019)
Coauthor Index
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last updated on 2024-09-02 21:24 CEST by the dblp team
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