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Huixiao Hong
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2020 – today
- 2023
- [j39]Huyen Le, Ru Chen, Stephen C. Harris, Hong Fang, Beverly Lyn-Cook, Huixiao Hong, Weigong Ge, Paul Rogers, Weida Tong, Wen Zou:
RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system. Frontiers Bioinform. 3 (2023) - 2022
- [j38]Ramin Homayouni, Huixiao Hong, Prashanti Manda, Bindu Nanduri, Inimary T. Toby:
Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. Frontiers Artif. Intell. 5: 859700 (2022) - [j37]Meng Song, Jonathan Greenbaum, Joseph Luttrell IV, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan Juan Zhao, Kuan-Jui Su
, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang:
An autoencoder-based deep learning method for genotype imputation. Frontiers Artif. Intell. 5 (2022) - 2021
- [j36]Srilatha Sakamuru
, Jinghua Zhao, Menghang Xia
, Huixiao Hong
, Anton Simeonov, Iosif I. Vaisman
, Ruili Huang
:
Predictive Models to Identify Small Molecule Activators and Inhibitors of Opioid Receptors. J. Chem. Inf. Model. 61(6): 2675-2685 (2021) - [c5]Weizhong Zhao, Huyen Le, James J. Chen, Hesha J. Duggirala, Richard Forshee, Taxiarchis Botsis, Henry Francis, Huixiao Hong, Weida Tong, Yi-Ting Hwang, Wen Zou:
Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches. BIBM 2021: 1197-1204 - [c4]Huyen Le, Junxiu Zhou, Weizhong Zhao, Roger Perkins, Weigong Ge, Beverly Lyn-Cook, Henry Francis, Huixiao Hong, Weida Tong, Wen Zou:
Text Fingerprinting and Topic Mining in the Prescription Opioid Use Literature. BIBM 2021: 2741-2748 - 2020
- [j35]Gabriel Idakwo, Sundar Thangapandian, Joseph Luttrell IV, Yan Li, Nan Wang, Zhaoxian Zhou
, Huixiao Hong, Bei Yang, Chaoyang Zhang
, Ping Gong:
Structure-activity relationship-based chemical classification of highly imbalanced Tox21 datasets. J. Cheminformatics 12(1): 66 (2020) - [j34]Sugunadevi Sakkiah, Carmine Leggett, Bohu Pan, Wenjing Guo
, Luis G. Valerio, Huixiao Hong
:
Development of a Nicotinic Acetylcholine Receptor nAChR α7 Binding Activity Prediction Model. J. Chem. Inf. Model. 60(4): 2396-2404 (2020)
2010 – 2019
- 2019
- [j33]Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong:
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38. BMC Bioinform. 20(1): 252:1 (2019) - [j32]Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo
, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
:
Similarities and differences between variants called with human reference genome HG19 or HG38. BMC Bioinform. 20-S(2): 17-29 (2019) - 2018
- [j31]Ping Gong, Keri B. Donohue, Anne M. Mayo, Yuping Wang, Huixiao Hong
, Mitchell S. Wilbanks, Natalie D. Barker, Xin Guan, Kurt A. Gust:
Comparative toxicogenomics of three insensitive munitions constituents 2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans. BMC Syst. Biol. 12(7): 31-46 (2018) - [j30]Chuipu Cai
, Jiansong Fang
, Pengfei Guo, Qi Wang, Huixiao Hong
, Javid Moslehi, Feixiong Cheng
:
In Silico Pharmacoepidemiologic Evaluation of Drug-Induced Cardiovascular Complications Using Combined Classifiers. J. Chem. Inf. Model. 58(5): 943-956 (2018) - 2017
- [j29]Feixiong Cheng, Huixiao Hong
, Sheng-Yong Yang, Yuquan Wei:
Individualized network-based drug repositioning infrastructure for precision oncology in the panomics era. Briefings Bioinform. 18(4): 682-697 (2017) - [j28]Andrew S. Maxwell, Runzhi Li, Bei Yang, Heng Weng, Aihua Ou, Huixiao Hong
, Zhaoxian Zhou
, Ping Gong, Chaoyang Zhang:
Deep learning architectures for multi-label classification of intelligent health risk prediction. BMC Bioinform. 18(14): 121-131 (2017) - [c3]Huixiao Hong, Carmine Leggett, Suguna Sakkiah:
Development of Nicotinic Acetylcholine Receptor nAChR α7 Binding Activity Prediction Model: Coupling Machine Learning with Competitive Molecular Docking. BCB 2017: 584 - 2016
- [j27]Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong
, Weida Tong, Wen Zou
:
A novel procedure on next generation sequencing data analysis using text mining algorithm. BMC Bioinform. 17: 213 (2016) - [j26]Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong
, Weida Tong, Wen Zou
:
Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm. BMC Bioinform. 17: 301 (2016) - [c2]Isaac Akogwu, Nan Wang, Chaoyang Zhang, Hwanseok Choi, Huixiao Hong, Ping Gong:
Factorial analysis of error correction performance using simulated next-generation sequencing data. BIBM 2016: 1164-1169 - 2015
- [j25]Heng Luo
, Hao Ye, Hui Wen Ng, Leming Shi, Weida Tong, William Mattes
, Donna Mendrick, Huixiao Hong
:
Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis. BMC Bioinform. 16(S13): S9 (2015) - 2014
- [j24]Hui Wen Ng, Wenqian Zhang, Mao Shu, Heng Luo
, Weigong Ge, Roger Perkins, Weida Tong, Huixiao Hong
:
Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists. BMC Bioinform. 15(S-11): S4 (2014) - [j23]Wenqian Zhang, Joe Meehan
, Zhenqiang Su, Hui Wen Ng, Mao Shu, Heng Luo
, Weigong Ge, Roger Perkins, Weida Tong, Huixiao Hong
:
Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population. BMC Bioinform. 15(S-11): S6 (2014) - 2013
- [j22]Jie Shen, Wenqian Zhang, Hong Fang, Roger Perkins, Weida Tong, Huixiao Hong
:
Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes. BMC Bioinform. 14(S-14): S6 (2013) - [j21]Huixiao Hong
, Qilong Hong, Jie Liu
, Weida Tong, Leming Shi:
Estimating relative noise to signal in DNA microarray data. Int. J. Bioinform. Res. Appl. 9(5): 433-448 (2013) - 2010
- [j20]Zhining Wen, Charles Wang, Quan Shi, Ying Huang, Zhenqiang Su, Huixiao Hong
, Weida Tong, Leming Shi:
Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples. BMC Bioinform. 11(S-6): S10 (2010) - [j19]Don Ding, Lei Xu, Hong Fang, Huixiao Hong
, Roger Perkins, Steve Harris, Edward D. Bearden, Leming Shi, Weida Tong:
The EDKB: an established knowledge base for endocrine disrupting chemicals. BMC Bioinform. 11(S-6): S5 (2010) - [j18]Joshua Xu, Carolyn Wise, Vijayalakshmi Varma, Hong Fang, Baitang Ning
, Huixiao Hong
, Weida Tong, Jim Kaput:
Two new ArrayTrack libraries for personalized biomedical research. BMC Bioinform. 11(S-6): S6 (2010)
2000 – 2009
- 2009
- [j17]Huixiao Hong
, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong:
The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. J. Comput. Biol. 16(12): 1671-1688 (2009) - [c1]Huixiao Hong, Qilong Hong, Weida Tong:
Accurate Prediction and Recognition of Subfamilies of G Protein-Coupled Receptors from Amino Acid Sequences. BIOCOMP 2009: 3-9 - 2008
- [j16]Huixiao Hong
, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong:
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinform. 9(S-9) (2008) - [j15]Zhenqiang Su, Huixiao Hong
, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong:
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. BMC Bioinform. 9(S-9) (2008) - [j14]Huixiao Hong
, Qian Xie, Weigong Ge, Feng Qian, Hong Fang, Leming Shi, Zhenqiang Su, Roger Perkins, Weida Tong:
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics. J. Chem. Inf. Model. 48(7): 1337-1344 (2008) - 2007
- [j13]Zhenqiang Su, Huixiao Hong
, Roger Perkins, Xueguang Shao
, Wensheng Cai, Weida Tong:
Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. Comput. Biol. Chem. 31(1): 48-56 (2007) - 2006
- [j12]Hideyuki Masui, Huixiao Hong
:
Spec2D: A Structure Elucidation System Based on 1H NMR and H-H COSY Spectra in Organic Chemistry. J. Chem. Inf. Model. 46(2): 775-787 (2006) - 2005
- [j11]Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong
, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan:
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. BMC Bioinform. 6(S-2) (2005) - [j10]Huixiao Hong
, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong:
Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinform. 6(S-2) (2005) - [j9]Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo
, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson
, Huixiao Hong
, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano:
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinform. 6(S-2) (2005) - [j8]Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo
, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong
, Qian Xie, Roger Perkins, James C. Fuscoe:
Microarray scanner calibration curves: characteristics and implications. BMC Bioinform. 6(S-2) (2005) - [j7]Qian Xie, Luke D. Ratnasinghe, Huixiao Hong
, Roger Perkins, Ze-Zhong Tang, Nan Hu, Philip R. Taylor, Weida Tong:
Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method. BMC Bioinform. 6(S-2) (2005) - 2003
- [j6]Weida Tong, Huixiao Hong
, Hong Fang, Qian Xie, Roger Perkins:
Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models. J. Chem. Inf. Comput. Sci. 43(2): 525-531 (2003)
1990 – 1999
- 1995
- [j5]Huixiao Hong
, Han Yinling, Xin Xinquan, Shi Yufeng:
ESSESA: An expert system for structure elucidation from spectra, 6. Substructure constraints from analysis of 13C-NMR spectra. J. Chem. Inf. Comput. Sci. 35(6): 979-1000 (1995) - 1994
- [j4]Huixiao Hong
, Xin Xinquan:
ESSESA: An Expert System for Structure Elucidation from Spectra. 4. Canonical Representation of Structures. J. Chem. Inf. Comput. Sci. 34(4): 730-734 (1994) - [j3]Huixiao Hong
, Xin Xinquan:
ESSESA: An Expert System for Structure Elucidation from Spectra. 5. Substructure Constraints from Analysis of First-Order 1H-NMR Spectra. J. Chem. Inf. Comput. Sci. 34(6): 1259-1266 (1994) - 1992
- [j2]Huixiao Hong
, Xin Xinquan:
ESSESA: An expert system for structure elucidation from spectra. 3. LNSCS for chemical knowledge representation. J. Chem. Inf. Comput. Sci. 32(1): 116-120 (1992) - 1990
- [j1]Huixiao Hong
, Xin Xinquan:
ESSESA: an expert system for elucidation of structures from spectra. 1. Knowledge base of infrared spectra and analysis and interpretation programs. J. Chem. Inf. Comput. Sci. 30(3): 203-210 (1990)
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