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Guo-Cheng Yuan
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2020 – today
- 2024
- [j15]Yufang Liu, Yongkai Chen, Haoran Lu, Wenxuan Zhong, Guo-Cheng Yuan, Ping Ma:
Orthogonal multimodality integration and clustering in single-cell data. BMC Bioinform. 25(1): 164 (2024) - 2021
- [j14]Fulong Yu
, Vijay G. Sankaran
, Guo-Cheng Yuan
:
CUT&RUNTools 2.0: a pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis. Bioinform. 38(1): 252-254 (2021) - 2020
- [j13]Rui Dong
, Guo-Cheng Yuan:
GiniClust3: a fast and memory-efficient tool for rare cell type identification. BMC Bioinform. 21(1): 158 (2020)
2010 – 2019
- 2019
- [j12]Sam Tracy
, Guo-Cheng Yuan, Ruben Dries
:
RESCUE: imputing dropout events in single-cell RNA-sequencing data. BMC Bioinform. 20(1): 388:1-388:11 (2019) - [j11]David N. Debruyne, Ruben Dries, Satyaki Sengupta, Davide Seruggia
, Yang Gao, Bandana Sharma, Hao Huang, Lisa Moreau, Michael McLane, Daniel S. Day, Eugenio Marco
, Ting Chen
, Nathanael S. Gray, Kwok-Kin Wong
, Stuart H. Orkin, Guo-Cheng Yuan, Richard A. Young, Rani E. George:
BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells. Nat. 572(7771): 676-680 (2019) - [j10]Michael P. Snyder
, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin
, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein
, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin
, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai
, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee
, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin
, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko
, Michael Clare-Salzler, Harry Nick, Kevin Otto
, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins
, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris
, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena
, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski
, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma
, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju
, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman
, Randy W. Heiland, Bruce William Herr II, Paul Macklin
, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher
, Shila Ghazanfar
, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav
, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson:
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. Nat. 574(7777): 187-192 (2019) - [c4]Lana X. Garmire, Guo-Cheng Yuan, Rong Fan, Gene W. Yeo, John Quackenbush:
Session introduction. PSB 2019: 332-337 - 2018
- [j9]Luca Pinello
, Rick Farouni
, Guo-Cheng Yuan:
Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements. Bioinform. 34(11): 1930-1933 (2018) - 2015
- [j8]Kimberly Glass
, John Quackenbush
, Dimitrios Spentzos, Benjamin Haibe-Kains
, Guo-Cheng Yuan:
A network model for angiogenesis in ovarian cancer. BMC Bioinform. 16: 115:1-115:17 (2015) - 2014
- [j7]Luca Pinello
, Giosuè Lo Bosco
, Guo-Cheng Yuan:
Applications of alignment-free methods in epigenomics. Briefings Bioinform. 15(3): 419-430 (2014) - [j6]Kimberly Glass
, John Quackenbush, Edwin K. Silverman, Bartolome Celli, Stephen I. Rennard, Guo-Cheng Yuan, Dawn L. DeMeo:
Sexually-dimorphic targeting of functionally-related genes in COPD. BMC Syst. Biol. 8: 118 (2014) - 2011
- [j5]Luca Pinello
, Giosuè Lo Bosco
, Bret M. Hanlon, Guo-Cheng Yuan:
A motif-independent metric for DNA sequence specificity. BMC Bioinform. 12: 408 (2011) - [c3]Guo-Cheng Yuan:
Workshop: Targeting mechanism of epigenetic factors. ICCABS 2011: 278 - [p1]Guo-Cheng Yuan:
Prediction of Epigenetic Target Sites by Using Genomic DNA Sequence. Handbook of Research on Computational and Systems Biology 2011: 187-201 - 2010
- [j4]Jessica L. Larson, Guo-Cheng Yuan:
Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model. BMC Bioinform. 11: 557 (2010) - [j3]Jessica L. Larson, Guo-Cheng Yuan:
A hidden Markov model for detecting multi-gene chromatin domains. BMC Bioinform. 11(S-10): O5 (2010)
2000 – 2009
- 2009
- [j2]Guo-Cheng Yuan:
Targeted Recruitment of Histone Modifications in Humans Predicted by Genomic Sequences. J. Comput. Biol. 16(2): 341-355 (2009) - 2008
- [j1]Guo-Cheng Yuan, Jun S. Liu
:
Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion. PLoS Comput. Biol. 4(1) (2008) - 2007
- [c2]Guo-Cheng Yuan, Jun S. Liu:
Statistial Analysis of nucleosome occupancy and histone modification data. BIBE 2007: 8 - [c1]Davide F. V. Corona, Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello, Guo-Cheng Yuan:
A New Multi-Layers Method to Analyze Gene Expression. KES (3) 2007: 862-869
Coauthor Index
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last updated on 2024-08-05 21:13 CEST by the dblp team
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