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ORCIDOrcun Goksel
Orçun Göksel
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- affiliation: ETH Zurich, Computer Vision Lab, Switzerland
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2020 – today
- 2024
[j41]Kevin Thandiackal, Tiziano Portenier, Andrea Giovannini, Maria Gabrani, Orcun Goksel:
Generative feature-driven image replay for continual learning. Image Vis. Comput. 150: 105187 (2024)- [j40]Lingkai Zhu
, Fei Zhou, Bozhi Liu, Orcun Goksel:
HDRfeat: A feature-rich network for high dynamic range image reconstruction. Pattern Recognit. Lett. 184: 148-154 (2024) - [j39]Kevin Thandiackal, Luigi Piccinelli, Rajarsi Gupta, Pushpak Pati, Orcun Goksel:
Multi-Scale Feature Alignment for Continual Learning of Unlabeled Domains. IEEE Trans. Medical Imaging 43(7): 2599-2609 (2024) - [i38]Alvaro Gomariz, Yusuke Kikuchi, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Daniela Ferrara, Huanxiang Lu, Orcun Goksel:
Joint semi-supervised and contrastive learning enables zero-shot domain-adaptation and multi-domain segmentation. CoRR abs/2405.05336 (2024) - 2023
- [j38]Pushpak Pati, Guillaume Jaume, Zeineb Ayadi, Kevin Thandiackal, Behzad Bozorgtabar, Maria Gabrani, Orcun Goksel:
Weakly supervised joint whole-slide segmentation and classification in prostate cancer. Medical Image Anal. 89: 102915 (2023) - [j37]Boqi Chen, Kevin Thandiackal, Pushpak Pati, Orcun Goksel:
Generative appearance replay for continual unsupervised domain adaptation. Medical Image Anal. 89: 102924 (2023) - [i37]Boqi Chen, Kevin Thandiackal, Pushpak Pati, Orcun Goksel:
Generative appearance replay for continual unsupervised domain adaptation. CoRR abs/2301.01211 (2023) - [i36]Pushpak Pati, Guillaume Jaume, Zeineb Ayadi, Kevin Thandiackal, Behzad Bozorgtabar, Maria Gabrani, Orcun Goksel:
Weakly Supervised Joint Whole-Slide Segmentation and Classification in Prostate Cancer. CoRR abs/2301.02933 (2023) - [i35]Kevin Thandiackal, Luigi Piccinelli, Pushpak Pati, Orcun Goksel:
Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains. CoRR abs/2302.01287 (2023) - [i34]Lin Zhang, Tiziano Portenier, Orcun Goksel:
Unpaired Translation from Semantic Label Maps to Images by Leveraging Domain-Specific Simulations. CoRR abs/2302.10698 (2023) - 2022
- [j36]Pushpak Pati, Guillaume Jaume, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani:
Hierarchical graph representations in digital pathology. Medical Image Anal. 75: 102264 (2022) - [c60]Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel:
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. ECCV (21) 2022: 699-715 - [c59]Alvaro Gomariz, Huanxiang Lu, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Fethallah Benmansour, Alessandra M. Valcarcel, Jennifer Luu, Daniela Ferrara, Orcun Goksel:
Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation. MICCAI (8) 2022: 351-361 - [i33]Alvaro Gomariz, Huanxiang Lu, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Fethallah Benmansour, Alessandra M. Valcarcel, Jennifer Luu, Daniela Ferrara, Orcun Goksel:
Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation. CoRR abs/2203.03664 (2022) - [i32]Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel:
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. CoRR abs/2204.12454 (2022) - 2021
- [j35]Alfred M. Franz, Orcun Goksel:
IJCARS - IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021 - Part 1. Int. J. Comput. Assist. Radiol. Surg. 16(5): 707-708 (2021) - [j34]Lin Zhang, Tiziano Portenier, Orcun Goksel:
Learning ultrasound rendering from cross-sectional model slices for simulated training. Int. J. Comput. Assist. Radiol. Surg. 16(5): 721-730 (2021) - [j33]Richard Rau, Dieter Schweizer, Valery Vishnevskiy, Orcun Goksel:
Speed-of-sound imaging using diverging waves. Int. J. Comput. Assist. Radiol. Surg. 16(7): 1201-1211 (2021) - [j32]Firat Özdemir, Zixuan Peng, Philipp Fürnstahl, Christine Tanner, Orcun Goksel:
Active learning for segmentation based on Bayesian sample queries. Knowl. Based Syst. 214: 106531 (2021) - [j31]Pushpak Pati, Antonio Foncubierta-Rodríguez, Orcun Goksel, Maria Gabrani:
Reducing annotation effort in digital pathology: A Co-Representation learning framework for classification tasks. Medical Image Anal. 67: 101859 (2021) - [j30]Richard Rau, Ozan Unal, Dieter Schweizer, Valery Vishnevsky, Orcun Goksel:
Frequency-dependent attenuation reconstruction with an acoustic reflector. Medical Image Anal. 67: 101875 (2021) - [j29]Alvaro Gomariz, Tiziano Portenier, Patrick M. Helbling, Stephan Isringhausen, Ute Suessbier, César Nombela-Arrieta, Orcun Goksel:
Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy. Nat. Mach. Intell. 3(9): 799-811 (2021) - [j28]Justine Robin, Richard Rau, Berkan Lafci, Aileen Schroeter, Michael Reiss, Xosé-Luís Dean-Ben, Orcun Goksel, Daniel Razansky:
Hemodynamic response to sensory stimulation in mice: Comparison between functional ultrasound and optoacoustic imaging. NeuroImage 237: 118111 (2021) - [c58]Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta, Anna Maria Anniciello, Florinda Feroce, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel:
Quantifying Explainers of Graph Neural Networks in Computational Pathology. CVPR 2021: 8106-8116 - [c57]Alvaro Gomariz, Raphael Egli, Tiziano Portenier, César Nombela-Arrieta, Orcun Goksel:
Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers. ISBI 2021: 371-374 - [c56]Bhaskara Rao Chintada, Richard Rau, Orcun Goksel:
Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography. ISBI 2021: 1342-1345 - [c55]Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel:
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs. MICCAI (2) 2021: 636-646 - [c54]Devavrat Tomar, Lin Zhang, Tiziano Portenier, Orcun Goksel:
Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images. MICCAI (8) 2021: 659-669 - [i31]Lin Zhang, Tiziano Portenier, Orcun Goksel:
Learning Ultrasound Rendering from Cross-Sectional Model Slices for Simulated Training. CoRR abs/2101.08339 (2021) - [i30]Alvaro Gomariz, Raphael Egli, Tiziano Portenier, César Nombela-Arrieta, Orcun Goksel:
Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers. CoRR abs/2101.11476 (2021) - [i29]Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani:
Hierarchical Cell-to-Tissue Graph Representations for Breast Cancer Subtyping in Digital Pathology. CoRR abs/2102.11057 (2021) - [i28]Alvaro Gomariz, Tiziano Portenier, César Nombela-Arrieta, Orcun Goksel:
Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps. CoRR abs/2102.11865 (2021) - [i27]Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel:
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs. CoRR abs/2103.03129 (2021) - [i26]Devavrat Tomar, Lin Zhang, Tiziano Portenier, Orcun Goksel:
Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images. CoRR abs/2103.05745 (2021) - [i25]Kevin Thandiackal, Tiziano Portenier, Andrea Giovannini, Maria Gabrani, Orcun Goksel:
Match What Matters: Generative Implicit Feature Replay for Continual Learning. CoRR abs/2106.05350 (2021) - 2020
- [c53]Pushpak Pati, Antonio Foncubierta-Rodríguez, Orçun Göksel, Maria Gabrani:
Mitosis Detection Under Limited Annotation: A Joint Learning Approach. ISBI 2020: 486-489 - [c52]Lin Zhang, Tiziano Portenier, Christoph Paulus, Orcun Goksel:
Deep Image Translation for Enhancing Simulated Ultrasound Images. ASMUS/PIPPI@MICCAI 2020: 85-94 - [c51]Emanuel Joos, Fabien Péan, Orcun Goksel:
Reinforcement Learning of Musculoskeletal Control from Functional Simulations. MICCAI (3) 2020: 135-145 - [c50]Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani:
HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. UNSURE/GRAIL@MICCAI 2020: 208-219 - [c49]Tiziano Portenier, Siavash Arjomand Bigdeli, Orcun Goksel:
GramGAN: Deep 3D Texture Synthesis From 2D Exemplars. NeurIPS 2020 - [e4]Martin Reuter, Christian Wachinger, Hervé Lombaert, Beatriz Paniagua, Orcun Goksel, Islem Rekik:
Shape in Medical Imaging - International Workshop, ShapeMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings. Lecture Notes in Computer Science 12474, Springer 2020, ISBN 978-3-030-61055-5 [contents] - [e3]Ziga Spiclin, Jamie McClelland, Jan Kybic, Orcun Goksel:
Biomedical Image Registration - 9th International Workshop, WBIR 2020, Portorož, Slovenia, December 1-2, 2020, Proceedings. Lecture Notes in Computer Science 12120, Springer 2020, ISBN 978-3-030-50119-8 [contents] - [i24]Firat Özdemir, Christine Tanner, Orcun Goksel:
Delineating Bone Surfaces in B-Mode Images Constrained by Physics of Ultrasound Propagation. CoRR abs/2001.02001 (2020) - [i23]Pushpak Pati, Antonio Foncubierta-Rodríguez, Orçun Göksel, Maria Gabrani:
Mitosis Detection Under Limited Annotation: A Joint Learning Approach. CoRR abs/2006.09772 (2020) - [i22]Lin Zhang, Valeriy Vishnevskiy, Orcun Goksel:
Deep Network for Scatterer Distribution Estimation for Ultrasound Image Simulation. CoRR abs/2006.10166 (2020) - [i21]Lin Zhang, Tiziano Portenier, Christoph Paulus, Orcun Goksel:
Deep Image Translation for Enhancing Simulated Ultrasound Images. CoRR abs/2006.10850 (2020) - [i20]Melanie Bernhardt, Valeriy Vishnevskiy, Richard Rau, Orcun Goksel:
Training Variational Networks with Multi-Domain Simulations: Speed-of-Sound Image Reconstruction. CoRR abs/2006.14395 (2020) - [i19]Tiziano Portenier, Siavash Arjomand Bigdeli, Orcun Goksel:
GramGAN: Deep 3D Texture Synthesis From 2D Exemplars. CoRR abs/2006.16112 (2020) - [i18]Guillaume Jaume, Pushpak Pati, Antonio Foncubierta-Rodríguez, Florinda Feroce, Giosue Scognamiglio, Anna Maria Anniciello, Jean-Philippe Thiran, Orcun Goksel, Maria Gabrani:
Towards Explainable Graph Representations in Digital Pathology. CoRR abs/2007.00311 (2020) - [i17]Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani:
HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. CoRR abs/2007.00584 (2020) - [i16]Emanuel Joos, Fabien Péan, Orçun Göksel:
Reinforcement Learning of Musculoskeletal Control from Functional Simulations. CoRR abs/2007.06669 (2020) - [i15]Alvaro Gomariz, Tiziano Portenier, Patrick M. Helbling, Stephan Isringhausen, Ute Suessbier, César Nombela-Arrieta, Orçun Göksel:
Modality Attention and Sampling Enables Deep Learning with Heterogeneous Marker Combinations in Fluorescence Microscopy. CoRR abs/2008.12380 (2020) - [i14]Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel:
Quantifying Explainers of Graph Neural Networks in Computational Pathology. CoRR abs/2011.12646 (2020) - [i13]Fabien Péan, Philippe Favre, Orcun Goksel:
Computational Analysis of Subscapularis Tears and Pectoralis Major Transfers on Muscular Activity. CoRR abs/2012.14340 (2020)
2010 – 2019
- 2019
- [j27]Firat Özdemir, Orcun Goksel:
Extending pretrained segmentation networks with additional anatomical structures. Int. J. Comput. Assist. Radiol. Surg. 14(7): 1187-1195 (2019) - [j26]Rastislav Starkov, Lin Zhang, Michael Bajka, Christine Tanner, Orcun Goksel:
Ultrasound simulation with deformable and patient-specific scatterer maps. Int. J. Comput. Assist. Radiol. Surg. 14(9): 1589-1599 (2019) - [j25]Rastislav Starkov, Christine Tanner, Michael Bajka, Orcun Goksel:
Ultrasound simulation with animated anatomical models and on-the-fly fusion with real images via path-tracing. Comput. Graph. 82: 44-52 (2019) - [j24]Torben Marhenke, Sergio J. Sanabria, Bhaskara Rao Chintada, Roman Furrer, Jürg Neuenschwander, Orcun Goksel:
Acoustic Field Characterization of Medical Array Transducers Based on Unfocused Transmits and Single-Plane Hydrophone Measurements. Sensors 19(4): 863 (2019) - [j23]Yuanhao Gong, Orcun Goksel:
Weighted mean curvature. Signal Process. 164: 329-339 (2019) - [j22]Sergio J. Sanabria, Marga B. Rominger, Orcun Goksel:
Speed-of-Sound Imaging Based on Reflector Delineation. IEEE Trans. Biomed. Eng. 66(7): 1949-1962 (2019) - [j21]Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani:
High-Quality Immunohistochemical Stains Through Computational Assay Parameter Optimization. IEEE Trans. Biomed. Eng. 66(10): 2952-2963 (2019) - [c48]Lin Zhang, Valeriy Vishnevskiy, András Jakab, Orcun Goksel:
Implicit Modeling With Uncertainty Estimation For Intravoxel Incoherent Motion Imaging. ISBI 2019: 1003-1007 - [c47]Andrawes Al Bahou, Christine Tanner, Orcun Goksel:
Scatgan for Reconstruction of Ultrasound Scatterers Using Generative Adversarial Networks. ISBI 2019: 1674-1677 - [c46]Alvaro Gomariz, Weiye Li, Ece Ozkan, Christine Tanner, Orcun Goksel:
Siamese Networks With Location Prior for Landmark Tracking in Liver Ultrasound Sequences. ISBI 2019: 1757-1760 - [c45]Valeriy Vishnevskiy, Richard Rau, Orcun Goksel:
Deep Variational Networks with Exponential Weighting for Learning Computed Tomography. MICCAI (6) 2019: 310-318 - [c44]Richard Rau, Ozan Unal, Dieter Schweizer, Valeriy Vishnevskiy, Orcun Goksel:
Attenuation Imaging with Pulse-Echo Ultrasound Based on an Acoustic Reflector. MICCAI (5) 2019: 601-609 - [c43]Pushpak Pati, Raúl Catena, Orcun Goksel, Maria Gabrani:
A deep learning framework for context-aware mitotic activity estimation in whole slide images. Medical Imaging: Digital Pathology 2019: 1095609 - [i12]Alvaro Gomariz, Weiye Li, Ece Ozkan, Christine Tanner, Orçun Göksel:
Siamese Networks with Location Prior for Landmark Tracking in Liver Ultrasound Sequences. CoRR abs/1901.08109 (2019) - [i11]Andrawes Al Bahou, Christine Tanner, Orcun Goksel:
SCATGAN for Reconstruction of Ultrasound Scatterers Using Generative Adversarial Networks. CoRR abs/1902.00469 (2019) - [i10]Yuanhao Gong, Orcun Goksel:
Weighted Mean Curvature. CoRR abs/1903.07189 (2019) - [i9]Valeriy Vishnevskiy, Richard Rau, Orcun Goksel:
Deep Variational Networks with Exponential Weighting for Learning Computed Tomography. CoRR abs/1906.05528 (2019) - [i8]Firat Özdemir, Zixuan Peng, Philipp Fürnstahl, Christine Tanner, Orcun Goksel:
Active Learning for Segmentation Based on Bayesian Sample Queries. CoRR abs/1912.10493 (2019) - 2018
- [j20]Matija Ciganovic, Firat Özdemir, Fabien Péan, Philipp Fürnstahl, Christine Tanner, Orcun Goksel:
Registration of 3D freehand ultrasound to a bone model for orthopedic procedures of the forearm. Int. J. Comput. Assist. Radiol. Surg. 13(6): 827-836 (2018) - [j19]Corin F. Otesteanu, Valery Vishnevsky, Orcun Goksel:
FEM-based elasticity reconstruction using ultrasound for imaging tissue ablation. Int. J. Comput. Assist. Radiol. Surg. 13(6): 885-894 (2018) - [j18]Oliver Mattausch, Maxim Makhinya, Orcun Goksel:
Realistic Ultrasound Simulation of Complex Surface Models Using Interactive Monte-Carlo Path Tracing. Comput. Graph. Forum 37(1): 202-213 (2018) - [j17]Oliver Mattausch, Orcun Goksel:
Image-Based Reconstruction of Tissue Scatterers Using Beam Steering for Ultrasound Simulation. IEEE Trans. Medical Imaging 37(3): 767-780 (2018) - [j16]Golnoosh Samei, Orcun Goksel, Julio Lobo, Omid Mohareri, Peter C. Black, Robert Rohling, Septimiu E. Salcudean:
Real-Time FEM-Based Registration of 3-D to 2.5-D Transrectal Ultrasound Images. IEEE Trans. Medical Imaging 37(8): 1877-1886 (2018) - [j15]Corin F. Otesteanu, Sergio J. Sanabria, Orcun Goksel:
Robust Reconstruction of Elasticity Using Ultrasound Imaging and Multi-Frequency Excitations. IEEE Trans. Medical Imaging 37(11): 2502-2513 (2018) - [c42]Valeriy Vishnevskiy, Sergio J. Sanabria, Orcun Goksel:
Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging. MLMIR@MICCAI 2018: 120-128 - [c41]Firat Özdemir, Zixuan Peng, Christine Tanner, Philipp Fürnstahl, Orçun Göksel:
Active Learning for Segmentation by Optimizing Content Information for Maximal Entropy. DLMIA/ML-CDS@MICCAI 2018: 183-191 - [c40]Kevin Thandiackal, Orcun Goksel:
A Structure-Aware Convolutional Neural Network for Skin Lesion Classification. OR 2.0/CARE/CLIP/ISIC@MICCAI 2018: 312-319 - [c39]Christine Tanner, Rastislav Starkov, Michael Bajka, Orcun Goksel:
Framework for Fusion of Data- and Model-Based Approaches for Ultrasound Simulation. MICCAI (4) 2018: 332-339 - [c38]Firat Özdemir, Philipp Fürnstahl, Orçun Göksel:
Learn the New, Keep the Old: Extending Pretrained Models with New Anatomy and Images. MICCAI (4) 2018: 361-369 - [e2]Ali Gooya, Orcun Goksel, Ipek Oguz, Ninon Burgos:
Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings. Lecture Notes in Computer Science 11037, Springer 2018, ISBN 978-3-030-00535-1 [contents] - [i7]Firat Özdemir, Philipp Fürnstahl, Orçun Göksel:
Learn the new, keep the old: Extending pretrained models with new anatomy and images. CoRR abs/1806.00265 (2018) - [i6]Firat Özdemir, Zixuan Peng, Christine Tanner, Philipp Fürnstahl, Orcun Goksel:
Active Learning for Segmentation by Optimizing Content Information for Maximal Entropy. CoRR abs/1807.06962 (2018) - [i5]Christine Tanner, Firat Özdemir, Romy Profanter, Valery Vishnevsky, Ender Konukoglu, Orçun Göksel:
Generative Adversarial Networks for MR-CT Deformable Image Registration. CoRR abs/1807.07349 (2018) - [i4]Valeriy Vishnevskiy, Sergio J. Sanabria, Orcun Goksel:
Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging. CoRR abs/1807.07416 (2018) - [i3]Lin Zhang, Valeriy Vishnevskiy, András Jakab, Orcun Goksel:
Implicit Modeling with Uncertainty Estimation for Intravoxel Incoherent Motion Imaging. CoRR abs/1810.10358 (2018) - [i2]Firat Özdemir, Orçun Göksel:
Extending Pretrained Segmentation Networks with Additional Anatomical Structures. CoRR abs/1811.04634 (2018) - 2017
- [j14]Ece Ozkan, Christine Tanner, Matej Kastelic, Oliver Mattausch, Maxim Makhinya, Orcun Goksel:
Robust motion tracking in liver from 2D ultrasound images using supporters. Int. J. Comput. Assist. Radiol. Surg. 12(6): 941-950 (2017) - [j13]Firat Özdemir, Neerav Karani, Philipp Fürnstahl, Orcun Goksel:
Interactive segmentation in MRI for orthopedic surgery planning: bone tissue. Int. J. Comput. Assist. Radiol. Surg. 12(6): 1031-1039 (2017) - [j12]Christine Tanner, Barbara Flach, Céline Eggenberger, Oliver Mattausch, Michael Bajka, Orcun Goksel:
Consistent reconstruction of 4D fetal heart ultrasound images to cope with fetal motion. Int. J. Comput. Assist. Radiol. Surg. 12(8): 1307-1317 (2017) - [j11]Valeriy Vishnevskiy, Tobias Gass, Gábor Székely, Christine Tanner, Orçun Göksel:
Isotropic Total Variation Regularization of Displacements in Parametric Image Registration. IEEE Trans. Medical Imaging 36(2): 385-395 (2017) - [c37]Waleed Farrukh, Antonio Foncubierta-Rodríguez, Anca-Nicoleta Ciubotaru, Guillaume Jaume, Costas Bekas, Orçun Göksel, Maria Gabrani:
Interpreting Data from Scanned Tables. GREC@ICDAR 2017: 5-6 - [c36]Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani:
Computational Immunohistochemistry: Recipes for Standardization of Immunostaining. MICCAI (2) 2017: 48-55 - [c35]Oliver Mattausch, Elizabeth Ren, Michael Bajka, Kenneth Vanhoey, Orcun Goksel:
Comparison of texture synthesis methods for content generation in ultrasound simulation for training. Medical Imaging: Image-Guided Procedures 2017: 1013523 - [p1]Orcun Goksel, Antonio Foncubierta-Rodríguez:
VISCERAL Anatomy Benchmarks for Organ Segmentation and Landmark Localization: Tasks and Results. Cloud-Based Benchmarking of Medical Image Analysis 2017: 107-125 - 2016
- [j10]Alessandro Crimi, Maxim Makhinya, Ulrich Baumann, Christoph Thalhammer, Gábor Székely, Orcun Goksel:
Automatic Measurement of Venous Pressure Using B-Mode Ultrasound. IEEE Trans. Biomed. Eng. 63(2): 288-299 (2016) - [j9]Oscar Alfonso Jiménez del Toro, Henning Müller, Markus Krenn, Katharina Gruenberg, Abdel Aziz Taha, Marianne Winterstein, Ivan Eggel, Antonio Foncubierta-Rodríguez, Orcun Goksel, András Jakab, Georgios Kontokotsios, Georg Langs, Bjoern H. Menze, Tomas Salas Fernandez, Roger Schaer, Anna Walleyo, Marc-André Weber, Yashin Dicente Cid, Tobias Gass, Mattias P. Heinrich, Fucang Jia, Fredrik Kahl, Razmig Kéchichian, Dominic Mai, Assaf B. Spanier, Graham Vincent, Chunliang Wang, Daniel Wyeth, Allan Hanbury:
Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks. IEEE Trans. Medical Imaging 35(11): 2459-2475 (2016) - [c34]Andreas Kurth, Andreas Tretter, Pascal A. Hager, Sergio J. Sanabria, Orçun Göksel, Lothar Thiele, Luca Benini:
Mobile Ultrasound Imaging on Heterogeneous Multi-Core Platforms. ESTIMedia 2016: 9-18 - [c33]Orcun Goksel, Valery Vishnevsky, Alvaro Gomariz Carrillo, Christine Tanner:
Imaging of sliding visceral interfaces during breathing. ISBI 2016: 298-301 - [c32]Corin F. Otesteanu, Sergio J. Sanabria, Orcun Goksel:
Analysis of excitation frequency in elasticity reconstruction using the FEM inverse-problem. ISBI 2016: 485-488 - [c31]Barbara Flach, Maxim Makhinya, Orcun Goksel:
Model-based compensation of tissue deformation during data acquisition for interpolative ultrasound simulation. ISBI 2016: 502-505 - [c30]Xiaoran Chen, Christine Tanner, Orçun Göksel, Gábor Székely, Valeria De Luca:
Temporal Prediction of Respiratory Motion Using a Trained Ensemble of Forecasting Methods. MIAR 2016: 383-391 - [c29]Oliver Mattausch, Orcun Goksel:
Image-Based PSF Estimation for Ultrasound Training Simulation. SASHIMI@MICCAI 2016: 23-33 - [c28]Barbara Flach, Maxim Makhinya, Orcun Goksel:
PURE: Panoramic Ultrasound Reconstruction by Seamless Stitching of Volumes. SASHIMI@MICCAI 2016: 75-84 - [c27]Janine Thoma, Firat Özdemir, Orcun Goksel:
Automatic Segmentation of Abdominal MRI Using Selective Sampling and Random Walker. MCV/BAMBI@MICCAI 2016: 83-93 - [c26]Firat Özdemir, Ece Ozkan, Orcun Goksel:
Graphical Modeling of Ultrasound Propagation in Tissue for Automatic Bone Segmentation. MICCAI (2) 2016: 256-264 - [c25]Sergio J. Sanabria, Orcun Goksel:
Hand-Held Sound-Speed Imaging Based on Ultrasound Reflector Delineation. MICCAI (1) 2016: 568-576 - [c24]Christine Tanner, Barbara Flach, Céline Eggenberger, Oliver Mattausch, Michael Bajka, Orcun Goksel:
4D Reconstruction of Fetal Heart Ultrasound Images in Presence of Fetal Motion. MICCAI (1) 2016: 593-601 - [c23]Oliver Mattausch, Orcun Goksel:
Monte-Carlo Ray-Tracing for Realistic Interactive Ultrasound Simulation. VCBM/MedViz 2016: 173-181 - [i1]Ece Ozkan, Gemma Roig, Orcun Goksel, Xavier Boix:
Herding Generalizes Diverse M -Best Solutions. CoRR abs/1611.04353 (2016) - 2015
- [j8]Peter Baki, Sergio J. Sanabria, Gabor Kosa, Gábor Székely, Orcun Goksel:
Thermal expansion imaging for monitoring lesion depth using M-mode ultrasound during cardiac RF ablation: in vitro study. Int. J. Comput. Assist. Radiol. Surg. 10(6): 681-693 (2015) - [j7]Siavash Khallaghi, C. Antonio Sánchez, Abtin Rasoulian, Yue Sun, Farhad Imani, Amir Khojaste, Orcun Goksel, Cesare Romagnoli, Hamidreza Abdi, Silvia D. Chang, Parvin Mousavi, Aaron Fenster, Aaron D. Ward, Sidney S. Fels, Purang Abolmaesumi:
Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions. IEEE Trans. Medical Imaging 34(11): 2404-2414 (2015) - [c22]Ece Ozkan, Orcun Goksel:
Compliance boundary conditions for simulating deformations in a limited target region. EMBC 2015: 929-932 - [c21]Oliver Mattausch, Orcun Goksel:
Scatterer reconstruction and parametrization of homogeneous tissue for ultrasound image simulation. EMBC 2015: 6350-6353 - [c20]Orcun Goksel, Antonio Foncubierta-Rodríguez, Oscar Alfonso Jiménez del Toro, Henning Müller, Georg Langs, Marc-André Weber, Bjoern H. Menze, Ivan Eggel, Katharina Gruenberg, Marianne Winterstein, Markus Holzer, Markus Krenn, Georgios Kontokotsios, Sokratis Metallidis, Roger Schaer, Abdel Aziz Taha, András Jakab, Tomas Salas Fernandez, Allan Hanbury:
Overview of the VISCERAL Challenge at ISBI 2015. VISCERAL Challenge@ISBI 2015: 6-11 - [c19]Valeriy Vishnevskiy, Tobias Gass, Gábor Székely, Christine Tanner, Orcun Goksel:
Unsupervised detection of local errors in image registration. ISBI 2015: 841-844 - [e1]Orcun Goksel, Oscar Alfonso Jiménez del Toro, Antonio Foncubierta-Rodríguez, Henning Müller:
Proceedings of the VISCERAL Anatomy3 Organ Segmentation Challenge co-located with IEEE International Symposium on Biomedical Imaging (ISBI 2015), Brooklyn, NY, USA, April 16, 2015. CEUR Workshop Proceedings 1390, CEUR-WS.org 2015 [contents] - 2014
- [j6]Tobias Gass, Gábor Székely, Orcun Goksel:
Simultaneous Segmentation and Multiresolution Nonrigid Atlas Registration. IEEE Trans. Image Process. 23(7): 2931-2943 (2014) - [c18]Alessandro Crimi, Maxim Makhinya, Ulrich Baumann, Gábor Székely, Orcun Goksel:
Vessel tracking for ultrasound-based venous pressure measurement. ISBI 2014: 306-309 - [c17]Tobias Gass, Gábor Székely, Orcun Goksel:
Multi-atlas Segmentation and Landmark Localization in Images with Large Field of View. MCV 2014: 171-180 - [c16]Valeriy Vishnevskiy, Tobias Gass, Gábor Székely, Orcun Goksel:
Total Variation Regularization of Displacements in Parametric Image Registration. ABDI@MICCAI 2014: 211-220 - [c15]Tobias Gass, Gábor Székely, Orcun Goksel:
Detection and correction of inconsistency-based errors in non-rigid registration. Medical Imaging: Image Processing 2014: 90341B - [c14]Tobias Gass, Gábor Székely, Orcun Goksel:
Auxiliary anatomical labels for joint segmentation and atlas registration. Medical Imaging: Image Processing 2014: 90343T - [c13]Tobias Gass, Gábor Székely, Orcun Goksel:
Registration Fusion Using Markov Random Fields. WBIR 2014: 213-222 - 2013
- [j5]Orcun Goksel, Kirill Sapchuk, William J. Morris, Septimiu E. Salcudean:
Prostate Brachytherapy Training With Simulated Ultrasound and Fluoroscopy Images. IEEE Trans. Biomed. Eng. 60(4): 1002-1012 (2013) - [j4]Orcun Goksel, Hani Eskandari, Septimiu E. Salcudean:
Mesh Adaptation for Improving Elasticity Reconstruction Using the FEM Inverse Problem. IEEE Trans. Medical Imaging 32(2): 408-418 (2013) - [c12]Kamal Shahim, Orcun Goksel, Philipp Jürgens, Mauricio Reyes:
Accuracy improvement in Cranio-Maxillofacial soft tissue simulation using a muscle embedded meshing approach. EMBC 2013: 7156-7159 - [c11]Orcun Goksel, Seokhee Jeon, Matthias Harders, Gábor Székely:
Deformable haptic model generation through manual exploration. World Haptics 2013: 543-548 - [c10]Orcun Goksel, Tobias Gass, Valery Vishnevsky, Gábor Székely:
Estimation of atlas-based segmentation outcome: Leveraging information from unsegmented images. ISBI 2013: 1215-1218 - 2012
- [c9]Tobias Gass, Gábor Székely, Orcun Goksel:
Semi-supervised Segmentation Using Multiple Segmentation Hypotheses from a Single Atlas. MCV 2012: 29-37 - [c8]Farheen Taquee, Orcun Goksel, Seyedeh Sara Mahdavi, Mira Keyes, William James Morris, Ingrid Spadinger, Septimiu E. Salcudean:
Deformable prostate registration from MR and TRUS images using surface error driven FEM models. Medical Imaging: Image-Guided Procedures 2012: 831612 - 2011
- [j3]Orcun Goksel, Septimiu E. Salcudean:
Image-Based Variational Meshing. IEEE Trans. Medical Imaging 30(1): 11-21 (2011) - [j2]Orcun Goksel, Kirill Sapchuk, Septimiu E. Salcudean:
Haptic Simulator for Prostate Brachytherapy with Simulated Needle and Probe Interaction. IEEE Trans. Haptics 4(3): 188-198 (2011) - [c7]Orcun Goksel, Kirill Sapchuk, Septimiu E. Salcudean:
Haptic simulation of needle and probe interaction with tissue for prostate brachytherapy training. World Haptics 2011: 7-12 - 2010
- [c6]Orcun Goksel, Septimiu E. Salcudean:
Haptic Simulator for Prostate Brachytherapy with Simulated Ultrasound. ISMBS 2010: 150-159
2000 – 2009
- 2009
- [j1]Orcun Goksel, Septimiu E. Salcudean:
B-Mode Ultrasound Image Simulation in Deformable 3-D Medium. IEEE Trans. Medical Imaging 28(11): 1657-1669 (2009) - [c5]Orcun Goksel, Septimiu E. Salcudean:
High-Quality Model Generation for Finite Element Simulation of Tissue Deformation. MICCAI (1) 2009: 248-256 - [c4]Seyedeh Sara Mahdavi, William J. Morris, Ingrid Spadinger, Nick Chng, Orcun Goksel, Septimiu E. Salcudean:
3D Prostate Segmentation in Ultrasound Images Based on Tapered and Deformed Ellipsoids. MICCAI (1) 2009: 960-967 - 2007
- [c3]Orcun Goksel, Septimiu E. Salcudean:
Real-Time Synthesis of Image Slices in Deformed Tissue from Nominal Volume Images. MICCAI (1) 2007: 401-408 - 2006
- [c2]Ehsan Dehghan, Orcun Goksel, Septimiu E. Salcudean:
A Comparison of Needle Bending Models. MICCAI (1) 2006: 305-312 - 2005
- [c1]Orcun Goksel, Septimiu E. Salcudean, Simon P. DiMaio, Robert Rohling, William James Morris:
3D Needle-Tissue Interaction Simulation for Prostate Brachytherapy. MICCAI 2005: 827-834
Coauthor Index
Antonio Foncubierta-Rodríguez
aka: Antonio Foncubierta
aka: Antonio Foncubierta
Alvaro Gomariz 0001
aka: Alvaro Gomariz Carrillo
aka: Alvaro Gomariz Carrillo
Tim Salcudean
aka: Septimiu E. Salcudean
aka: Septimiu E. Salcudean
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