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Andrzej Kloczkowski
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2020 – today
- 2023
- [c18]Andrzej Kloczkowski
, Juan Luis Fernández Martínez
, Zulima Fernández-Muñiz
:
Computational Models for COVID-19 Dynamics Prediction. ICAISC (2) 2023: 228-238 - [c17]Óscar Álvarez-Machancoses
, Eshel Faraggi
, Enrique J. de Andrés-Galiana
, Juan Luis Fernández Martínez
, Andrzej Kloczkowski
:
Prediction of Functional Effects of Protein Amino Acid Mutations. IWBBIO (2) 2023: 59-71 - [c16]Saba Shahzadi
, Mubashir Hassan
, Andrzej Kloczkowski
:
Structural Analysis of RNA-Binding Protein EWSR1 Involved in Ewing's Sarcoma Through Domain Assembly and Conformational Molecular Dynamics Studies. IWBBIO (1) 2023: 181-190 - [c15]Mubashir Hassan
, Saba Shahzadi
, Andrzej Kloczkowski
:
Pharmacoinformatic Analysis of Drug Leads for Alzheimer's Disease from FDA-Approved Dataset Through Drug Repositioning Studies. IWBBIO (1) 2023: 191-201 - 2022
- [j18]Enrique J. deAndrés-Galiana
, Juan Luis Fernández Martínez, Óscar Álvarez-Machancoses, Guillermina Bea, Carlos M. Galmarini
, Andrzej Kloczkowski:
Analysis of transcriptomic responses to SARS-CoV-2 reveals plausible defective pathways responsible for increased susceptibility to infection and complications and helps to develop fast-track repositioning of drugs against COVID-19. Comput. Biol. Medicine 149: 106029 (2022) - 2021
- [j17]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita
, Zoran Obradovic, Johannes Söding
, Martin Steinegger
, Yaoqi Zhou
, Lukasz A. Kurgan
:
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021) - [p1]Eshel Faraggi, Robert L. Jernigan
, Andrzej Kloczkowski:
A Hybrid Levenberg-Marquardt Algorithm on a Recursive Neural Network for Scoring Protein Models. Artificial Neural Networks, 3rd Edition 2021: 307-316 - [e1]Yufei Huang, Lukasz A. Kurgan, Feng Luo, Xiaohua Hu, Yidong Chen, Edward R. Dougherty, Andrzej Kloczkowski, Yaohang Li:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Houston, TX, USA, December 9-12, 2021. IEEE 2021, ISBN 978-1-6654-0126-5 [contents] - 2020
- [j16]Fran Sérgio Lobato
, Gustavo Barbosa Libotte
, Gustavo Mendes Platt
, Andrzej Kloczkowski:
Identification of an Epidemiological Model to Simulate the COVID-19 Epidemic Using Robust Multiobjective Optimization and Stochastic Fractal Search. Comput. Math. Methods Medicine 2020: 9214159:1-9214159:8 (2020) - [c14]Óscar Álvarez-Machancoses
, Enrique J. deAndrés-Galiana
, Juan Luis Fernández Martínez
, Andrzej Kloczkowski
:
The Utilization of Different Classifiers to Perform Drug Repositioning in Inclusion Body Myositis Supports the Concept of Biological Invariance. ICAISC (1) 2020: 589-598 - [c13]Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker:
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB 2020: 159-170
2010 – 2019
- 2019
- [j15]Eshel Faraggi
, A. Keith Dunker, Robert L. Jernigan
, Andrzej Kloczkowski
:
Entropy, Fluctuations, and Disordered Proteins. Entropy 21(8): 764 (2019) - [c12]Girik Malik, Anirban Banerji, Maksim Kouza, Irina Alexandra Buhimschi, Andrzej Kloczkowski:
Deciphering General Characteristics of Residues Constituting Allosteric Communication Paths. IWBBIO (2) 2019: 245-258 - [c11]Michael T. Zimmermann
, Fadi Towfic, Robert L. Jernigan, Andrzej Kloczkowski:
Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage. IWBBIO (1) 2019: 356-369 - 2018
- [j14]Óscar Álvarez
, Juan Luis Fernández Martínez
, Celia Fernández-Brillet
, Ana Cernea, Zulima Fernández-Muñiz
, Andrzej Kloczkowski:
Principal component analysis in protein tertiary structure prediction. J. Bioinform. Comput. Biol. 16(2): 1850005:1-1850005:34 (2018) - [c10]Óscar Álvarez
, Juan Luis Fernández Martínez
, Celia Fernández-Brillet, Ana Cernea, Zulima Fernández-Muñiz
, Andrzej Kloczkowski:
On the Use of Principal Component Analysis and Particle Swarm Optimization in Protein Tertiary Structure Prediction. ICAISC (2) 2018: 107-116 - [c9]Óscar Álvarez
, Juan Luis Fernández Martínez
, Ana Cernea, María Zulima Fernández-Muñiz
, Andrzej Kloczkowski:
Protein Tertiary Structure Prediction via SVD and PSO Sampling. IWBBIO (1) 2018: 211-220 - 2016
- [j13]Sumudu P. Leelananda, Andrzej Kloczkowski, Robert L. Jernigan
:
Fold-specific sequence scoring improves protein sequence matching. BMC Bioinform. 17: 328 (2016) - [j12]Shamima Rashid, Saras Saraswathi, Andrzej Kloczkowski, Suresh Sundaram, Andrzej Kolinski
:
Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach. BMC Bioinform. 17: 362 (2016) - [j11]Sumudu P. Leelananda, Robert L. Jernigan
, Andrzej Kloczkowski:
Predicting Designability of Small Proteins from Graph Features of Contact Maps. J. Comput. Biol. 23(5): 400-411 (2016) - 2015
- [j10]Vasily Sachnev, Saras Saraswathi, Rashid Niaz, Andrzej Kloczkowski, Suresh Sundaram:
Multi-class BCGA-ELM based classifier that identifies biomarkers associated with hallmarks of cancer. BMC Bioinform. 16: 166:1-166:12 (2015) - [c8]Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski:
Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models. RECOMB 2015: 188-201 - 2014
- [j9]Pawel Gniewek
, Andrzej Kolinski
, Andrzej Kloczkowski, Dominik Gront
:
BioShell-Threading: versatile Monte Carlo package for protein 3D threading. BMC Bioinform. 15: 22 (2014) - 2013
- [c7]Saras Saraswathi, B. S. Mahanand, Andrzej Kloczkowski, Suresh Sundaram, N. Sundararajan:
Detection of onset of Alzheimer's disease from MRI images using a GA-ELM-PSO classifier. CIMI 2013: 42-48 - 2012
- [j8]Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan
, Zhijun Wu:
P.R.E.S.S. - an R-package for Exploring Residual-Level protein Structural Statistics. J. Bioinform. Comput. Biol. 10(3) (2012) - 2011
- [j7]Michael T. Zimmermann
, Andrzej Kloczkowski, Robert L. Jernigan
:
MAVEN: Motion Analysis and Visualization of Elastic Networks and Structural Ensembles. BMC Bioinform. 12: 264 (2011) - [c6]Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu:
P.R.E.S.S. - An R-package for exploring residual-level protein structural statistics. BIBM Workshops 2011: 382-389 - [c5]Juan Luis Fernández Martínez
, Esperanza García Gonzalo
, Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski:
Particle Swarm Optimization: A Powerful Family of Stochastic Optimizers. Analysis, Design and Application to Inverse Modelling. ICSI (1) 2011: 1-8 - 2010
- [j6]Yaping Feng, Andrzej Kloczkowski, Robert L. Jernigan
:
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials. BMC Bioinform. 11: 92 (2010) - [c4]Michael T. Zimmermann
, Aris Skliros, Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan:
Immunoglobulin functional motions and their effects on the complementarity determining regions. BCB 2010: 621-626 - [c3]Ataur R. Katebi, Pawel Gniewek, Michael T. Zimmermann, Saras Saraswathi, Zhenming Gong, Christopher K. Tuggle, Andrzej Kloczkowski, Robert L. Jernigan:
Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos. BCB 2010: 653-655 - [c2]Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan:
An Extreme Learning Machine Classifier for Prediction of Relative Solvent Accessibility in Proteins. IJCCI (ICFC-ICNC) 2010: 364-369 - [c1]Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski, Andrzej Kolinski:
Protein Secondary Structure Prediction using Knowledge-based Potentials. IJCCI (ICFC-ICNC) 2010: 370-375
2000 – 2009
- 2008
- [j5]Myron Peto, Andrzej Kloczkowski, Vasant G. Honavar
, Robert L. Jernigan
:
Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable. BMC Bioinform. 9 (2008) - 2007
- [j4]Haitao Cheng, Taner Z. Sen
, Robert L. Jernigan
, Andrzej Kloczkowski:
Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM). Bioinform. 23(19): 2628-2630 (2007) - 2006
- [j3]Taner Z. Sen
, Andrzej Kloczkowski, Robert L. Jernigan
:
Functional clustering of yeast proteins from the protein-protein interaction network. BMC Bioinform. 7: 355 (2006) - 2005
- [j2]Taner Z. Sen
, Robert L. Jernigan
, Jean Garnier, Andrzej Kloczkowski:
GOR V server for protein secondary structure prediction. Bioinform. 21(11): 2787-2788 (2005) - 2004
- [j1]Taner Z. Sen
, Andrzej Kloczkowski, Robert L. Jernigan
, Changhui Yan, Vasant G. Honavar
, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs
:
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. BMC Bioinform. 5: 205 (2004)
Coauthor Index
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last updated on 2024-08-16 19:25 CEST by the dblp team
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