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Vladimir N. Uversky
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2020 – today
- 2024
- [j26]Sk. Sarif Hassan, Tanishta Bhattacharya
, Debaleena Nawn, Ishana Jha, Pallab Basu, Elrashdy M. Redwan
, Kenneth Lundstrom, Debmalya Barh
, Bruno Silva Andrade, Murtaza M. Tambuwala
, Alaa A. A. Aljabali
, Altijana Hromic-Jahjefendic, Wagner Baetas-da-Cruz, Ángel Serrano-Aroca
, Vladimir N. Uversky:
SARS-CoV-2 NSP14 governs mutational instability and assists in making new SARS-CoV-2 variants. Comput. Biol. Medicine 170: 107899 (2024) - 2023
- [j25]Zhihua Du
, Tianyou Huang, Vladimir N. Uversky
, Jianqiang Li
:
Predicting TF Proteins by Incorporating Evolution Information Through PSSM. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1319-1326 (2023) - [c9]Zhihua Du, Tianyou Huang, Jian-Qiang Li, Vladimir N. Uversky:
TFBSnet: A deep learning-based tool for predicting transcription factor binding site from DNA sequences. BIBM 2023: 494-499 - 2022
- [j24]Zhihua Du, Xing Zhong, Fangzhong Wang, Vladimir N. Uversky:
Inference of gene regulatory networks based on the Light Gradient Boosting Machine. Comput. Biol. Chem. 101: 107769 (2022) - [j23]Fatemeh Bayani
, Negin Safaei Hashkavaei, Vladimir N. Uversky
, Sina Mozaffari-Jovin
, Yahya Sefidbakht
:
Insights into the structural peculiarities of the N-terminal and receptor binding domains of the spike protein from the SARS-CoV-2 Omicron variant. Comput. Biol. Medicine 147: 105735 (2022) - [j22]Min Fang, Yufeng He, Zhihua Du
, Vladimir N. Uversky
:
DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3154-3159 (2022) - 2021
- [j21]Naveen Kumar
, Rahul Kaushik
, Chandana Tennakoon, Vladimir N. Uversky, Sonia Longhi, Kam Y. J. Zhang, Sandeep Bhatia:
Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions. Briefings Bioinform. 22(5) (2021) - [j20]Sagnik Sen, Ashmita Dey, Sanghamitra Bandhyopadhyay, Vladimir N. Uversky, Ujjwal Maulik:
Understanding structural malleability of the SARS-CoV-2 proteins and relation to the comorbidities. Briefings Bioinform. 22(6) (2021) - [j19]Sarif Sk. Hassan
, Alaa A. A. Aljabali
, Pritam Kumar Panda, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz
, Antonio Soares
, Ramesh Kandimalla, Kenneth Lundstrom, Amos Lal
, Gajendra Kumar Azad, Vladimir N. Uversky, Samendra Sherchan, Wagner Baetas-da-Cruz
, Bruce D. Uhal, Nima Rezaei
, Gaurav Chauhan, Debmalya Barh, Elrashdy M. Redwan
, Guy W. Dayhoff II, Nicolas G. Bazan
, Ángel Serrano-Aroca
, Amr El-Demerdash
, Yogendra Kumar Mishra
, Giorgio Palù, Kazuo Takayama
, Adam M. Brufsky, Murtaza M. Tambuwala
:
A unique view of SARS-CoV-2 through the lens of ORF8 protein. Comput. Biol. Medicine 133: 104380 (2021) - [c8]Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky:
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB 2021 - 2020
- [j18]Zhihua Du, Yufeng He, Jianqiang Li, Vladimir N. Uversky:
DeepAdd: Protein function prediction from k-mer embedding and additional features. Comput. Biol. Chem. 89: 107379 (2020) - [c7]Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker:
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB 2020: 159-170
2010 – 2019
- 2019
- [j17]Orkid Coskuner-Weber
, Vladimir N. Uversky
:
Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-β42. J. Chem. Inf. Model. 59(2): 871-884 (2019) - 2017
- [j16]Orkid Coskuner
, Vladimir N. Uversky
:
Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β42: A New Clustering Algorithm for Disordered Proteins. J. Chem. Inf. Model. 57(6): 1342-1358 (2017) - [j15]Damiano Piovesan
, Francesco Tabaro
, Ivan Micetic
, Marco Necci
, Federica Quaglia
, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic
, Zsuzsanna Dosztányi
, Arne Elofsson, Alessandra Gasparini, András Hatos
, Andrey V. Kajava
, Lajos Kalmár
, Emanuela Leonardi
, Tamas Lazar, Sandra Macedo-Ribeiro
, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai
, Jordi Pujols, Daniel B. Roche, Edoardo Salladini
, Éva Schád, Antoine Schramm, Beáta Szabó
, Ágnes Tantos, Fiorella Tonello
, Konstantinos D. Tsirigos
, Nevena Veljkovic
, Salvador Ventura
, Wim F. Vranken
, Per Warholm
, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi
, Peter Tompa, Silvio C. E. Tosatto
:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - 2015
- [j14]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen
, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker:
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 16: 241:1-241:2 (2015) - 2014
- [j13]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu
, Li Shen
, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker:
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 15(S-17): S4 (2014) - [j12]Mihaly Varadi
, Simone Kosol
, Pierre Lebrun, Erica Valentini
, Martin Blackledge, A. Keith Dunker, Isabella C. Felli
, Julie D. Forman-Kay
, Richard W. Kriwacki, Roberta Pierattelli
, Joel L. Sussman
, Dmitri I. Svergun
, Vladimir N. Uversky, Michele Vendruscolo
, David S. Wishart
, Peter E. Wright
, Peter Tompa
:
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42(Database-Issue): 326-335 (2014) - 2013
- [j11]Matt E. Oates
, Pedro Romero, Takashi Ishida
, Mohamed F. Ghalwash
, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan
, A. Keith Dunker, Julian Gough:
D2P2: database of disordered protein predictions. Nucleic Acids Res. 41(Database-Issue): 508-516 (2013) - 2012
- [j10]Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
:
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. 28(12): 75-83 (2012) - [j9]Vladimir Vacic
, Phineus R. L. Markwick, Christopher J. Oldfield, Xiaoyue Zhao, Chad Haynes, Vladimir N. Uversky, Lilia M. Iakoucheva
:
Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder. PLoS Comput. Biol. 8(10) (2012) - [c6]Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing 2012: 116-127 - [c5]Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing 2012: 128-139 - 2011
- [j8]Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou
, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
:
In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. 12: 245 (2011) - 2010
- [j7]Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky:
Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. 4(S-1): S1 (2010)
2000 – 2009
- 2009
- [j6]Amrita Mohan, Vladimir N. Uversky, Predrag Radivojac:
Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins. PLoS Comput. Biol. 5(9) (2009) - 2008
- [j5]Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon
, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter:
Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. 4(12) (2008) - 2007
- [j4]Vladimir Vacic
, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi
:
Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8 (2007) - [j3]Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic
, Marc S. Cortese
, Ágnes Tantos, Beáta Szabó
, Peter Tompa, Jake Yue Chen
, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker:
DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35(Database-Issue): 786-793 (2007) - [c4]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: Predictions and Applications. BIBE 2007: 1 - [c3]Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker:
Intrinsically Disordered Proteins in Human Diseases. BIBE 2007: 12 - [c2]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: An Update. BIBE 2007: 49-58 - [c1]Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker:
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP 2007: 553-566 - 2006
- [j2]Chad Haynes, Christopher J. Oldfield, Fei Ji, Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva
:
Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes. PLoS Comput. Biol. 2(8) (2006) - 2005
- [j1]Mauro Colafranceschi, Alfredo Colosimo, Joseph P. Zbilut, Vladimir N. Uversky, Alessandro Giuliani
:
Structure-Related Statistical Singularities along Protein Sequences: A Correlation Study. J. Chem. Inf. Model. 45(1): 183-189 (2005)
Coauthor Index
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last updated on 2024-08-05 21:21 CEST by the dblp team
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