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2020 – today
- 2024
[j26]Xinyan Wang, Kuo Yang, Ting Jia, Fanghui Gu, Chongyu Wang, Kuan Xu, Zixin Shu, Jianan Xia, Qiang Zhu, Xuezhong Zhou
:
KDGene: knowledge graph completion for disease gene prediction using interactional tensor decomposition. Briefings Bioinform. 25(3) (2024)- [j25]Qiguang Zheng, Qifan Shen, Zixin Shu, Kai Chang, Kunyu Zhong, Yuhang Yan, Jia Ke, Jingjing Huang, Rui Su, Jianan Xia, Xuezhong Zhou:
Deep representation learning from electronic medical records identifies distinct symptom based subtypes and progression patterns for COVID-19 prognosis. Int. J. Medical Informatics 191: 105555 (2024) - [j24]Xin Dong, Chenxi Zhao, Xinpeng Song, Lei Zhang, Yu Liu, Jun Wu, Yiran Xu, Ning Xu, Jialing Liu, Haibin Yu, Kuo Yang, Xuezhong Zhou:
PresRecST: a novel herbal prescription recommendation algorithm for real-world patients with integration of syndrome differentiation and treatment planning. J. Am. Medical Informatics Assoc. 31(6): 1268-1279 (2024) - [j23]Rui Hua, Xin Dong, Yu Wei, Zixin Shu, Pengcheng Yang, Yunhui Hu, Shuiping Zhou, He Sun, Kaijing Yan, Xijun Yan, Kai Chang, Xiaodong Li, Yuning Bai, Runshun Zhang, Wenjia Wang, Xuezhong Zhou:
Lingdan: enhancing encoding of traditional Chinese medicine knowledge for clinical reasoning tasks with large language models. J. Am. Medical Informatics Assoc. 31(9): 2019-2029 (2024) - [c48]Fenghui Zhang, Kuo Yang, Chenqian Zhao, Haixu Li, Xin Dong, Haoyu Tian, Xuezhong Zhou:
Benchmarking Biomedical Relation Knowledge in Large Language Models. ISBRA (2) 2024: 482-495 - [c47]Qiye Lin, Jiaqi Zhao, Ruiwen Fan, Xuezhong Zhou, Jianan Xia:
Dynamic Feature Fusion Based on Consistency and Complementarity of Brain Atlases. PRCV (15) 2024: 19-33 - [i5]Xingzhi Zhou, Xin Dong, Chunhao Li, Yuning Bai, Yulong Xu, Ka Chun Cheung, Simon See, Xinpeng Song, Runshun Zhang, Xuezhong Zhou, Nevin L. Zhang:
TCM-FTP: Fine-Tuning Large Language Models for Herbal Prescription Prediction. CoRR abs/2407.10510 (2024) - [i4]Zixin Shu, Rui Hua, Dengying Yan, Chenxia Lu, Ning Xu, Jun Li, Hui Zhu, Jia Zhang, Dan Zhao, Chenyang Hui, Junqiu Ye, Chu Liao, Qi Hao, Wen Ye, Cheng Luo, Xinyan Wang, Chuang Cheng, Xiaodong Li, Baoyan Liu, Xiaji Zhou, Runshun Zhang, Min Xu, Xuezhong Zhou:
ISPO: An Integrated Ontology of Symptom Phenotypes for Semantic Integration of Traditional Chinese Medical Data. CoRR abs/2407.12851 (2024) - 2023
- [j22]Kuo Yang, Yuxia Yang, Shuyue Fan, Jianan Xia, Qiguang Zheng, Xin Dong, Jun Liu, Qiong Liu, Lei Lei, Yingying Zhang, Bing Li, Zhuye Gao, Runshun Zhang, Baoyan Liu, Zhong Wang, Xuezhong Zhou:
DRONet: effectiveness-driven drug repositioning framework using network embedding and ranking learning. Briefings Bioinform. 24(1) (2023) - [j21]Kezhi Lu, Kuo Yang, Hailong Sun, Qian Zhang, Qiguang Zheng, Kuan Xu, Jianxin Chen, Xuezhong Zhou:
SympGAN: A systematic knowledge integration system for symptom-gene associations network. Knowl. Based Syst. 276: 110752 (2023) - [c46]Ning Xu, Kunyu Zhong, Kai Chang, Lifeng Fa, Jinlong Yu, Haibin Yu, Xuezhong Zhou, Lei Zhang:
Classification Characteristics of COPD Based on Combination of Disease and Syndrome in Real World. BIBM 2023: 4667-4674 - [i3]Kuan Xu, Kuo Yang, Hanyang Dong, Xinyan Wang, Xuezhong Zhou:
A Pre-training Framework for Knowledge Graph Completion. CoRR abs/2302.02614 (2023) - [i2]Xinyan Wang, Ting Jia, Chongyu Wang, Kuan Xu, Zixin Shu, Kuo Yang, Xuezhong Zhou:
Knowledge Graph Completion based on Tensor Decomposition for Disease Gene Prediction. CoRR abs/2302.09335 (2023) - [i1]Kuo Yang, Zecong Yu, Xin Su, Xiong He, Ning Wang, Qiguang Zheng, Feidie Yu, Zhuang Liu, Tiancai Wen, Xuezhong Zhou:
A optimization framework for herbal prescription planning based on deep reinforcement learning. CoRR abs/2304.12828 (2023) - 2022
- [j20]Peng Li, Haoran Zhang, Wuxia Zhang, Yuanyuan Zhang, Lingmin Zhan, Ning Wang, Caiping Chen, Bangze Fu, Jinzhong Zhao, Xuezhong Zhou, Shuzhen Guo, Jianxin Chen:
TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine. Briefings Bioinform. 23(1) (2022) - [j19]Ting Jia, Yuxia Yang, Xi Lu, Qiang Zhu, Kuo Yang, Xuezhong Zhou:
Link Prediction based on Tensor Decomposition for the Knowledge Graph of COVID-19 Antiviral Drug. Data Intell. 4(1): 134-148 (2022) - [j18]Kuo Yang, Yi Zheng, Kezhi Lu, Kai Chang, Ning Wang, Zixin Shu, Jian Yu, Baoyan Liu, Zhuye Gao, Xuezhong Zhou:
PDGNet: Predicting Disease Genes Using a Deep Neural Network With Multi-View Features. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 575-584 (2022) - [c45]Qiguang Zheng, Qifan Shen, Xin Su, Kuo Yang, Zixin Shu, Xuezhong Zhou:
RESurv: A Deep Survival Analysis Model to Reveal Population Heterogeneity by Individual Risk. BIBM 2022: 2751-2758 - [c44]Yu Tian, Qi Xie, Runshun Zhang, Xuezhong Zhou, Tiancai Wen, Lei Zhang, Xingping Zhang, Bin Wang, Xu Miao, Jie Yang, Baoyan Liu:
Research and Implementation of Real World Traditional Chinese Medicine Clinical Scientific Research Information Electronic Medical Record Sharing System. BIBM 2022: 3715-3718 - [c43]Rui Hua, Xinyan Wang, Chuang Cheng, Qiang Zhu, Xuezhong Zhou:
A Chemical Domain Knowledge-Aware Framework for Multi-view Molecular Property Prediction. CCKS (Evaluation Track) 2022: 1-11 - 2021
- [c42]Xin Dong, Yi Zheng, Zixin Shu, Kai Chang, Dengying Yan, Jianan Xia, Qiang Zhu, Kunyu Zhong, Xinyan Wang, Kuo Yang, Xuezhong Zhou:
TCMPR: TCM Prescription recommendation based on subnetwork term mapping and deep learning. BIBM 2021: 3776-3783 - [c41]Yang Yang, Fangyuan Dai, Xin Ma, Xue Yu, Xuezhong Zhou, Ping Li:
COX-2 as the key target of LianXia NingXin Formula for treating Sympathetic Remodeling after Myocardial Infarction: pharmacological network prediction with experimental validation. BIBM 2021: 3898-3905 - [c40]Qunsheng Zou, Kuo Yang, Kai Chang, Xiaoping Zhang, Xiaodong Li, Xuezhong Zhou:
Phenonizer: A fine-grained phenotypic named entity recognizer for Chinese clinical texts. BIBM 2021: 3963-3970 - 2020
- [j17]Shiwen Ma, Kuo Yang, Ning Wang, Qiang Zhu, Zhuye Gao, Runshun Zhang, Baoyan Liu, Xuezhong Zhou:
Disease phenotype synonymous prediction through network representation learning from PubMed database. Artif. Intell. Medicine 102: 101745 (2020) - [j16]Kezhi Lu, Kuo Yang, Edouard Niyongabo, Zixin Shu, Jingjing Wang, Kai Chang, Qunsheng Zou, Jiyue Jiang, Caiyan Jia, Baoyan Liu, Xuezhong Zhou:
Integrated network analysis of symptom clusters across disease conditions. J. Biomed. Informatics 107: 103482 (2020) - [c39]Yifei Wang, Ying Xing, Min Pi, Runshun Zhang, Xiong He, Xuezhong Zhou, Motan Qiu, Tiancai Wen:
Analysis of diabetic comorbidities and their interrelationships in 5227 Chinese patients with type 2 diabetes. BIBM 2020: 1602-1607 - [c38]Yinyan Wang, Kuo Yang, Zixin Shu, Dengying Yan, Xuezhong Zhou:
Network-based gene prediction for TCM symptoms. BIBM 2020: 2847-2854
2010 – 2019
- 2019
- [j15]Yisha Lan, Yimin Ding, Xin Luo, Yanzhao Zhang, Chenxi Huang, E. Y. K. Ng, Weihong Huang, Xuezhong Zhou, Jie Su, Yonghong Peng, Zhicheng Wang, Yongqiang Cheng, Wenliang Che:
A Clustering Based Transfer Function for Volume Rendering Using Gray-Gradient Mode Histogram. IEEE Access 7: 80737-80747 (2019) - [j14]Zixin Shu, Wenwen Liu, Huikun Wu, Mingzhong Xiao, Deng Wu, Ting Cao, Meng Ren, Junxiu Tao, Chuhua Zhang, Tangqing He, Xiaodong Li, Runshun Zhang, Xuezhong Zhou:
Symptom-based network classification identifies distinct clinical subgroups of liver diseases with common molecular pathways. Comput. Methods Programs Biomed. 174: 41-50 (2019) - [j13]Yang Wu, Feilong Zhang, Kuo Yang, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Hairuo Hu, Kuo Gao, Wei Wang, Xuezhong Zhou, Yi Zhao, Jianxin Chen:
SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. Nucleic Acids Res. 47(Database-Issue): D1110-D1117 (2019) - [j12]Kuo Yang, Ruyu Wang, Guangming Liu, Zixin Shu, Ning Wang, Runshun Zhang, Jian Yu, Jianxin Chen, Xiaodong Li, Xuezhong Zhou:
HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction. IEEE J. Biomed. Health Informatics 23(4): 1805-1815 (2019) - 2018
- [j11]Kuo Yang, Ning Wang, Guangming Liu, Ruyu Wang, Jian Yu, Runshun Zhang, Jianxin Chen, Xuezhong Zhou:
Heterogeneous network embedding for identifying symptom candidate genes. J. Am. Medical Informatics Assoc. 25(11): 1452-1459 (2018) - [j10]Kuo Yang, Guangming Liu, Ning Wang, Runshun Zhang, Jian Yu, Jianxin Chen, Xuezhong Zhou:
Heterogeneous network propagation for herb target identification. BMC Medical Informatics Decis. Mak. 18(S-1): 27-37 (2018) - [c37]Lili Xu, Weilian Kong, Yinghui Wang, Xiaofeng Sun, Xuezhong Zhou, Runshun Zhang, Yanxing Xue, Weibin Wang:
Discovery of Xuantoujiedu Decoction and its Molecular Mechanisms Using Integrated Network Analysis. BIBM 2018: 1934-1940 - [c36]Mengfei Guo, Yanan Yu, Tiancai Wen, Xiaoping Zhang, Baoyan Liu, Jin Zhang, Runshun Zhang, Yanning Zhang, Xuezhong Zhou:
Analysis of Disease Comorbidity Patterns in a Large-Scale China Population. ICIC (2) 2018: 272-278 - 2017
- [j9]Wei Ma, Lu Zhang, Pan Zeng, Chuanbo Huang, Jianwei Li, Bin Geng, Jichun Yang, Wei Kong, Xuezhong Zhou, Qinghua Cui:
An analysis of human microbe-disease associations. Briefings Bioinform. 18(1): 85-97 (2017) - [c35]Edward W. Huang, Sheng Wang, Doris J. Lee, Runshun Zhang, Baoyan Liu, Xuezhong Zhou, ChengXiang Zhai:
Framing Electronic Medical Records as Polylingual Documents in Query Expansion. AMIA 2017 - [c34]Edward W. Huang, Sheng Wang, Bingxue Li, Ran Zhang, Baoyan Liu, Runshun Zhang, Jie Liu, Xuezhong Zhou, Hongsheng Lin, ChengXiang Zhai:
HEMnet: Integration of Electronic Medical Records with Molecular Interaction Networks and Domain Knowledge for Survival Analysis. BCB 2017: 378-387 - [c33]Guangming Liu, Bianfang Chai, Kuo Yang, Xuezhong Zhou, Jian Yu:
Overlapping Functional Modules Detection in PPI Network with Pairwise Constrained Nonnegative Matrix Tri-Factorization. BCB 2017: 756-757 - 2016
- [j8]Huaiyu Wan, Marie-Francine Moens, Walter Luyten, Xuezhong Zhou, Qiaozhu Mei, Lu Liu, Jie Tang:
Extracting relations from traditional Chinese medicine literature via heterogeneous entity networks. J. Am. Medical Informatics Assoc. 23(2): 356-365 (2016) - [c32]Edward W. Huang, Sheng Wang, Runshun Zhang, Baoyan Liu, Xuezhong Zhou, ChengXiang Zhai:
PaReCat: Patient Record Subcategorization for Precision Traditional Chinese Medicine. BCB 2016: 443-452 - [c31]Sheng Wang, Edward W. Huang, Runshun Zhang, Xiaoping Zhang, Baoyan Liu, Xuezhong Zhou, ChengXiang Zhai:
A conditional probabilistic model for joint analysis of symptoms, diseases, and herbs in traditional Chinese medicine patient records. BIBM 2016: 411-418 - [c30]Shiwen Ma, Kuo Yang, Xuezhong Zhou, Xue Xu, Wenwen Liu:
Similarity-based algorithms for Disease Terminology Mapping. BIBM 2016: 1378-1384 - 2015
- [c29]Kuo Yang, Xuezhong Zhou, Runshun Zhang, Baoyan Liu, Lei Lei, Xiaoping Zhang, Hongwei Chu, Changkai Sun, Zhuye Gao, Hao Xu:
Integrating herb effect similarity for network-based herb target prediction. BMEI 2015: 483-488 - 2014
- [c28]Jian Wang, Xiaoping Zhang, Biyan Liang, Xuezhong Zhou, Jiaming Lu, Liran Xu, Xin Deng, Xiuhui Li, Li Wang, Xinghua Tan, Yuxiang Mao, Guoliang Zhang, Junwen Wang, Xiaodong Li, Yuguang Wang:
Regularity of herbal formulae for HIV/AIDS patients with syndromes based on complex networks. CIBD 2014: 77-83 - [c27]Lizhi Feng, Xuezhong Zhou, Haixun Qi, Runshun Zhang, Yinghui Wang, Baoyan Liu:
Development of large-scale TCM corpus using hybrid named entity recognition methods for clinical phenotype detection: An initial study. CIBD 2014: 84-90 - [c26]Guanli Song, Yinghui Wang, Runshun Zhang, Baoyan Liu, Xuezhong Zhou, Guanbo Song, Liang Xie, Xinghuan Huang:
Methods and technologies of traditional Chinese medicine clinical information datamation in real world. CIBD 2014: 91-95 - 2013
- [j7]Qi Feng, Xuezhong Zhou, Houkuan Huang, Xiaoping Zhang, Runshun Zhang:
Modelling traditional Chinese medicine therapy planning with POMDP. Int. J. Funct. Informatics Pers. Medicine 4(2): 145-166 (2013) - [c25]Yubing Li, Xuezhong Zhou, Runshun Zhang, Yinghui Wang, Jingqing Hu, Qi Xie, Baoyan Liu:
Complex network approach for analyzing TCM clinical herb-symptom relationships. BIBM 2013: 116-117 - [c24]Xing Li, Xuezhong Zhou, Yonghong Peng, Runshun Zhang, Jingqing Hu, Jian Yu, Baoyan Liu:
Integrating phenotype-genotype data for prioritization of candidate symptom genes. BIBM 2013: 279-280 - [c23]Lei Zhang, Yi-guo Wang, Qiming Zhang, Xuezhong Zhou, Jian Yu, Xiuhua Guo, Xia Li:
Frequent itemsets compressing based on minimum cover: An efficient method for mining medication law of Chinese herbs. BIBM 2013: 315-318 - 2012
- [c22]Kai Liu, Xuezhong Zhou, Yan Feng, Jie Liu:
Clinical data preprocessing and case studies of POMDP for TCM treatment knowledge discovery. Healthcom 2012: 10-14 - [c21]Zaixing Jiang, Xuezhong Zhou, Xiaoping Zhang, Shibo Chen:
Using link topic model to analyze traditional Chinese Medicine Clinical symptom-herb regularities. Healthcom 2012: 15-18 - [c20]Lanxin Bi, Xuezhong Zhou, Lei Zhang, Runshun Zhang:
Multidimensional analysis for Traditional Chinese Medicine diagnosis and treatment on hepatitis diseases. Healthcom 2012: 52-56 - [c19]Xishui Pan, Xuezhong Zhou, Hongmei Song, Runshun Zhang, Tingting Zhang:
Enhanced data extraction, transforming and loading processing for Traditional Chinese Medicine clinical data warehouse. Healthcom 2012: 57-61 - [c18]Xiaoping Zhang, Xuezhong Zhou, Runshun Zhang, Baoyan Liu, Qi Xie:
Real-world clinical data mining on TCM clinical diagnosis and treatment: A survey. Healthcom 2012: 88-93 - [c17]Huaxin Shi, Qi Xie, Xiaodong Li, Baoyan Liu, Shusong Mao, Xuezhong Zhou:
Constructing ideas of health service platform for the elderly. Healthcom 2012: 526-529 - 2011
- [j6]Simon K. Poon, Josiah Poon, Martin McGrane, Xuezhong Zhou, Paul Wing Hing Kwan, Runsun Zhang, Baoyan Liu, Junbin Gao, Clement Loy, Kelvin Chan, Daniel Man-yuen Sze:
A novel approach in discovering significant interactions from TCM patient prescription data. Int. J. Data Min. Bioinform. 5(4): 353-368 (2011) - [c16]Simon K. Poon, Kei Fan, Josiah Poon, Clement Loy, Kelvin Chan, Paul Wing Hing Kwan, Xuezhong Zhou, Junbin Gao, Runsun Zhang, Yinghui Runshun, Daniel Man-yuen Sze:
Analysis of herbal formulation in TCM: Infertility as a case study. BIBM Workshops 2011: 868-872 - [c15]Josiah Poon, Dawei Yin, Simon K. Poon, Xuezhong Zhou, Runshun Zhang, Baoyan Liu, Daniel Man-yuen Sze:
Co-evolutionary genetic algorithm in symptom-herb relationship discovery. BIBM Workshops 2011: 890-894 - [c14]Ninglin Du, Xuezhong Zhou, Runshun Zhang, Caiyan Jia, Jian Yu, Baoyan Liu:
Multiscale backbone based network comparison algorithm for effective herbal interaction analysis. BMEI 2011: 1757-1762 - 2010
- [j5]Xuezhong Zhou, Shibo Chen, Baoyan Liu, Runsun Zhang, Yinghui Wang, Ping Li, Yufeng Guo, Hua Zhang, Zhuye Gao, Xiufeng Yan:
Development of traditional Chinese medicine clinical data warehouse for medical knowledge discovery and decision support. Artif. Intell. Medicine 48(2-3): 139-152 (2010) - [j4]Xuezhong Zhou, Yonghong Peng, Baoyan Liu:
Text mining for traditional Chinese medical knowledge discovery: A survey. J. Biomed. Informatics 43(4): 650-660 (2010) - [c13]Ping Li, Xuezhong Zhou, Ronglin Gao, Sa Wu:
Empirical study on treatment of Coronary Heart Disease with famous doctors' method of regulating spleen and stomach based on simplified point-wise mutual information. BIBM Workshops 2010: 617-619 - [c12]Martin McGrane, Simon K. Poon, Josiah Poon, Kelvin Chan, Clement Loy, Xuezhong Zhou, Runshun Zhang, Baoyan Liu, Paul Kwan, Daniel Man-yuen Sze, Junbin Gao:
Analysis of synergistic and antagonistic effects of TCM: Cases on diabetes and insomnia. BIBM Workshops 2010: 620-624 - [c11]Josiah Poon, Simon K. Poon, Dawei Yin, Kelvin Chan, Clement Loy, Xuezhong Zhou, Runshun Zhang, Baoyan Liu, Paul Kwan, Daniel Man-yuen Sze, Junbin Gao:
Studying herb-herb interaction for insomnia through the theory of complementarities. BIBM Workshops 2010: 722-726 - [c10]Xuezhong Zhou, Josiah Poon, Paul Wing Hing Kwan, Runsun Zhang, Yinghui Wang, Simon K. Poon, Baoyan Liu, Daniel Man-yuen Sze:
Novel Two-Stage Analytic Approach in Extraction of Strong Herb-Herb Interactions in TCM Clinical Treatment of Insomnia. ICMB 2010: 258-267
2000 – 2009
- 2009
- [c9]Xuezhong Zhou, Baoyan Liu:
Network Analysis System for Traditional Chinese Medicine Clinical Data. BMEI 2009: 1-5 - [c8]Xuezhong Zhou, Runsun Zhang, Yinghui Wang, Ping Li, Baoyan Liu:
Network Analysis for Core Herbal Combination Knowledge Discovery from Clinical Chinese Medical Formulae. DBTA 2009: 188-191 - [c7]Qi Feng, Xuezhong Zhou, Houkuan Huang, Xiaoping Zhang:
An Uncertainty-Based Belief Selection Method for POMDP Value Iteration. ECSQARU 2009: 841-849 - 2008
- [c6]Xuezhong Zhou, Baoyan Liu, Yinghui Wang, Runsun Zhang, Ping Li, Shibo Chen, Yufeng Guo, Zhuye Gao, Hua Zhang:
Building Clinical Data Warehouse for Traditional Chinese Medicine Knowledge Discovery. BMEI (1) 2008: 615-620 - 2007
- [j3]Xuezhong Zhou, Baoyan Liu, Zhaohui Wu, Yi Feng:
Integrative mining of traditional Chinese medicine literature and MEDLINE for functional gene networks. Artif. Intell. Medicine 41(2): 87-104 (2007) - 2006
- [j2]Yi Feng, Zhaohui Wu, Xuezhong Zhou, Zhongmei Zhou, Weiyu Fan:
Knowledge discovery in traditional Chinese medicine: State of the art and perspectives. Artif. Intell. Medicine 38(3): 219-236 (2006) - 2005
- [c5]Xuezhong Zhou, Baoyan Liu, Zhaohui Wu:
Text Mining for Clinical Chinese Herbal Medical Knowledge Discovery. Discovery Science 2005: 396-398 - 2004
- [j1]Xuezhong Zhou, Zhaohui Wu, Aining Yin, Lancheng Wu, Weiyu Fan, Ruen Zhang:
Ontology development for unified traditional Chinese medical language system. Artif. Intell. Medicine 32(1): 15-27 (2004) - [c4]Junli Chen, Xuezhong Zhou, Zhaohui Wu:
A Multi-Label Chinese Text Categorization System Based on Boosting Algorithm. CIT 2004: 1153-1158 - [c3]Zhaohui Wu, Xuezhong Zhou, Baoyan Liu, Junli Chen:
Text Mining for Finding Functional Community of Related Genes Using TCM Knowledge. PKDD 2004: 459-470 - [c2]Xuezhong Zhou, Zhaohui Wu:
Distributional Character Clustering for Chinese Text Categorization. PRICAI 2004: 575-584 - 2001
- [c1]Xuezhong Zhou, Zhaohui Wu, Wei Lu:
TCMMDB: a distributed multidatabase query system and its key technique implemention. SMC 2001: 1095-1100
Coauthor Index
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