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ORCIDTijana Milenkovic
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2020 – today
- 2022
[j36]Shawn Gu
, Meng Jiang, Pietro Hiram Guzzi, Tijana Milenkovic:
Modeling multi-scale data via a network of networks. Bioinform. 38(9): 2544-2553 (2022)- [j35]Khalique Newaz, Tijana Milenkovic:
Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 974-988 (2022) - [j34]Qi Li, Tijana Milenkovic:
Supervised Prediction of Aging-Related Genes From a Context-Specific Protein Interaction Subnetwork. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2484-2498 (2022) - 2021
- [j33]Shawn Gu, Tijana Milenkovic:
Data-driven biological network alignment that uses topological, sequence, and functional information. BMC Bioinform. 22(1): 34 (2021) - [j32]Qi Li, Khalique Newaz, Tijana Milenkovic:
Improved supervised prediction of aging-related genes via weighted dynamic network analysis. BMC Bioinform. 22(1): 520 (2021) - [j31]Shikang Liu, Fatemeh Vahedian, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic:
Heterogeneous Network Approach to Predict Individuals' Mental Health. ACM Trans. Knowl. Discov. Data 15(2): 25:1-25:26 (2021) - 2020
- [j30]Vipin Vijayan, Shawn Gu, Eric T. Krebs, Lei Meng, Tijana Milenkovic:
Pairwise Versus Multiple Global Network Alignment. IEEE Access 8: 41961-41974 (2020) - [j29]Khalique Newaz, Gabriel Wright, Jacob Piland, Jun Li, Patricia L. Clark, Scott J. Emrich, Tijana Milenkovic:
Network analysis of synonymous codon usage. Bioinform. 36(19): 4876-4884 (2020) - [c16]Vipin Vijayan, Shawn Gu, Eric T. Krebs, Lei Meng, Tijana Milenkovic:
Pairwise Versus Multiple Global Network Alignment. BCB 2020: 4:1 - [c15]Shikang Liu, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic:
The Power of Dynamic Social Networks to Predict Individuals' Mental Health. PSB 2020: 635-646 - [i13]Qi Li, Tijana Milenkovic:
Improving supervised prediction of aging-related genes via dynamic network analysis. CoRR abs/2005.03659 (2020)
2010 – 2019
- 2019
- [j28]David Oliveira Aparício, Pedro Ribeiro, Tijana Milenkovic, Fernando Silva:
Temporal network alignment via GoT-WAVE. Bioinform. 35(18): 3527-3529 (2019) - [c14]Qi Li, Tijana Milenkovic:
Supervised prediction of aging-related genes from a context-specific protein interaction subnetwork. BIBM 2019: 130-137 - [i12]Shikang Liu, Fatemeh Vahedian, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic:
Heterogeneous network approach to predict individuals' mental health. CoRR abs/1906.04346 (2019) - [i11]Shikang Liu, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic:
The power of dynamic social networks to predict individuals' mental health. CoRR abs/1908.02614 (2019) - [i10]Hongyu Guo, Khalique Newaz, Scott J. Emrich, Tijana Milenkovic, Jun Li:
Weighted graphlets and deep neural networks for protein structure classification. CoRR abs/1910.02594 (2019) - 2018
- [j27]Shikang Liu, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic:
Network analysis of the NetHealth data: exploring co-evolution of individuals' social network positions and physical activities. Appl. Netw. Sci. 3(1): 45:1-45:26 (2018) - [j26]Pietro Hiram Guzzi, Tijana Milenkovic:
Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin. Briefings Bioinform. 19(3): 472-481 (2018) - [j25]Vipin Vijayan, Tijana Milenkovic:
Aligning dynamic networks with DynaWAVE. Bioinform. 34(10): 1795-1798 (2018) - [j24]Vipin Vijayan, Tijana Milenkovic:
Aligning dynamic networks with DynaWAVE. Bioinform. 34(11): 1980 (2018) - [j23]Tijana Milenkovic, Sarath Chandra Janga:
Great Lakes Bioinformatics Conference (GLBIO) 2015 Special Section Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. 15(4): 1229-1230 (2018) - [j22]Vipin Vijayan, Tijana Milenkovic:
Multiple Network Alignment via MultiMAGNA++. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1669-1682 (2018) - [c13]Vipin Vijayan, Tijana Milenkovic:
Aligning Dynamic Networks with DynaWAVE. BCB 2018: 569 - [i9]Arash Rahnama, Khalique Newaz, Panos J. Antsaklis, Tijana Milenkovic:
Network-based protein structural classification. CoRR abs/1804.04725 (2018) - [i8]Shawn Gu, Tijana Milenkovic:
Graphlets versus node2vec and struc2vec in the task of network alignment. CoRR abs/1805.04222 (2018) - [i7]David Oliveira Aparício, Pedro Ribeiro, Tijana Milenkovic, Fernando Silva:
GoT-WAVE: Temporal network alignment using graphlet-orbit transitions. CoRR abs/1808.08195 (2018) - 2017
- [j21]Ömer Nebil Yaveroglu, Noël Malod-Dognin, Tijana Milenkovic, Natasa Przulj:
Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods. Bioinform. 33(7): 1107-1109 (2017) - [j20]Vipin Vijayan, Dominic Critchlow, Tijana Milenkovic:
Alignment of dynamic networks. Bioinform. 33(14): i180-i189 (2017) - [j19]Boyoung Yoo, Fazle Elahi Faisal, Huili Chen, Tijana Milenkovic:
Improving Identification of Key Players in Aging via Network De-Noising and Core Inference. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1056-1069 (2017) - [i6]Vipin Vijayan, Dominic Critchlow, Tijana Milenkovic:
Alignment of dynamic networks. CoRR abs/1701.08842 (2017) - 2016
- [j18]Yuriy Hulovatyy, Huili Chen, Tijana Milenkovic:
Exploring the structure and function of temporal networks with dynamic graphlets. Bioinform. 32(15): 2402 (2016) - [j17]Lei Meng, Aaron Striegel, Tijana Milenkovic:
Local versus global biological network alignment. Bioinform. 32(20): 3155-3164 (2016) - [j16]Lei Meng, Yuriy Hulovatyy, Aaron Striegel, Tijana Milenkovic:
On the Interplay Between Individuals' Evolving Interaction Patterns and Traits in Dynamic Multiplex Social Networks. IEEE Trans. Netw. Sci. Eng. 3(1): 32-43 (2016) - [i5]Yuriy Hulovatyy, Tijana Milenkovic:
SCOUT: simultaneous time segmentation and community detection in dynamic networks. CoRR abs/1605.01491 (2016) - 2015
- [j15]Joseph Crawford, Yihan Sun, Tijana Milenkovic:
Fair evaluation of global network aligners. Algorithms Mol. Biol. 10: 19 (2015) - [j14]Yuriy Hulovatyy, Huili Chen, Tijana Milenkovic:
Exploring the structure and function of temporal networks with dynamic graphlets. Bioinform. 31(12): 171-180 (2015) - [j13]Vipin Vijayan, Vikram Saraph, Tijana Milenkovic:
MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation. Bioinform. 31(14): 2409-2411 (2015) - [j12]Ömer Nebil Yaveroglu, Tijana Milenkovic, Natasa Przulj:
Proper evaluation of alignment-free network comparison methods. Bioinform. 31(16): 2697-2704 (2015) - [j11]Fazle Elahi Faisal, Lei Meng, Joseph Crawford, Tijana Milenkovic:
The post-genomic era of biological network alignment. EURASIP J. Bioinform. Syst. Biol. 2015: 3 (2015) - [j10]Fazle Elahi Faisal, Han Zhao, Tijana Milenkovic:
Global Network Alignment in the Context of Aging. IEEE ACM Trans. Comput. Biol. Bioinform. 12(1): 40-52 (2015) - [c12]Joseph Crawford, Yihan Sun, Tijana Milenkovic:
Fair evaluation of global network aligners. BCB 2015: 490 - [c11]Joseph Crawford, Tijana Milenkovic:
GREAT: GRaphlet Edge-based network AlignmenT. BIBM 2015: 220-227 - [c10]Joseph Crawford, Yihan Sun, Tijana Milenkovic:
Fair evaluation of global network aligners. BIBM 2015: 1768-1770 - [c9]Yihan Sun, Joseph Crawford, Jie Tang, Tijana Milenkovic:
Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE. WABI 2015: 16-39 - 2014
- [j9]Fazle Elahi Faisal, Tijana Milenkovic:
Dynamic networks reveal key players in aging. Bioinform. 30(12): 1721-1729 (2014) - [j8]Vikram Saraph, Tijana Milenkovic:
MAGNA: Maximizing Accuracy in Global Network Alignment. Bioinform. 30(20): 2931-2940 (2014) - [j7]Yuriy Hulovatyy, Sidney K. D'Mello, Rafael A. Calvo, Tijana Milenkovic:
Network analysis improves interpretation of affective physiological data†. J. Complex Networks 2(4): 614-636 (2014) - [j6]Andrew K. Rider, Tijana Milenkovic, Geoffrey H. Siwo, Richard S. Pinapati:
Networks' characteristics are important for systems biology. Netw. Sci. 2(2): 139-161 (2014) - [c8]Boyoung Yoo, Huili Chen, Fazle Elahi Faisal, Tijana Milenkovic:
Improving identification of key players in aging via network de-noising. BCB 2014: 164-173 - [c7]Fazle Elahi Faisal, Tijana Milenkovic:
Dynamic networks reveal key players in aging. BCB 2014: 579 - [c6]Fazle Elahi Faisal, Han Zhao, Tijana Milenkovic:
Global network alignment in the context of aging. BCB 2014: 580 - [c5]Lei Meng, Tijana Milenkovic, Aaron Striegel:
Systematic Dynamic and Heterogeneous Analysis of Rich Social Network Data. CompleNet 2014: 25-37 - [i4]Joseph Crawford, Tijana Milenkovic:
GREAT: GRaphlet Edge-based network AlignmenT. CoRR abs/1410.5103 (2014) - [i3]Yuriy Hulovatyy, Huili Chen, Tijana Milenkovic:
Exploring the structure and function of temporal networks with dynamic graphlets. CoRR abs/1412.3885 (2014) - 2013
- [c4]Tijana Milenkovic, Han Zhao, Fazle Elahi Faisal:
Global Network Alignment In The Context Of Aging. BCB 2013: 23 - [c3]Tijana Milenkovic, Han Zhao, Fazle Elahi Faisal:
Using Global Network Alignment In The Context Of Aging. BCB 2013: 661 - [c2]Fazle Elahi Faisal, Tijana Milenkovic:
Dynamic networks reveal key players in aging. BCB 2013: 662 - [c1]Yuriy Hulovatyy, Sidney K. D'Mello, Rafael A. Calvo, Tijana Milenkovic:
Network Analysis Improves Interpretation of Affective Physiological Data. SITIS 2013: 470-477 - [i2]Fazle Elahi Faisal, Tijana Milenkovic:
Dynamic networks reveal key players in aging. CoRR abs/1307.3388 (2013) - 2012
- [j5]Ryan W. Solava, Ryan P. Michaels, Tijana Milenkovic:
Graphlet-based edge clustering reveals pathogen-interacting proteins. Bioinform. 28(18): 480-486 (2012) - [i1]Ryan W. Solava, Ryan P. Michaels, Tijana Milenkovic:
Identifying edge clusters in networks via edge graphlet degree vectors (edge-GDVs) and edge-GDV-similarities. CoRR abs/1204.2255 (2012) - 2010
- [j4]Hsiang Ho, Tijana Milenkovic, Vesna Memisevic, Jayavani Aruri, Natasa Przulj, Anand K. Ganesan:
Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets. BMC Syst. Biol. 4: 84 (2010) - [j3]Vesna Memisevic, Tijana Milenkovic, Natasa Przulj:
An integrative approach to modeling biological networks. J. Integr. Bioinform. 7(3) (2010) - [j2]Vesna Memisevic, Tijana Milenkovic, Natasa Przulj:
Complementarity of network and sequence information in homologous proteins. J. Integr. Bioinform. 7(3) (2010)
2000 – 2009
- 2008
- [j1]Tijana Milenkovic, Jason Lai, Natasa Przulj:
GraphCrunch: A tool for large network analyses. BMC Bioinform. 9 (2008)
Coauthor Index
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