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Ludwig Geistlinger
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2020 – today
- 2023
- [j8]Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman:
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinform. 39(3) (2023) - [j7]Kelly B. Eckenrode
, Dario Righelli
, Marcel Ramos
, Ricard Argelaguet, Christophe Vanderaa
, Ludwig Geistlinger, Aedín C. Culhane
, Laurent Gatto
, Vincent J. Carey, Martin Morgan
, Davide Risso, Levi Waldron:
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19(8) (2023) - 2021
- [j6]Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos
, Lucas Schiffer
, Nitesh Turaga, Charity W. Law, Sean R. Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer
, Levi Waldron
:
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22(1): 545-556 (2021) - [j5]Adriana Tomic
, Ivan Tomic, Levi Waldron
, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng
, Lindsay C. Dahora
, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill
, Niharika A. Duggal
, Ross D. Pollock
, Norman R. Lazarus, Stephen D. R. Harridge
, Janet M. Lord
, Purvesh Khatri
, Andrew J. Pollard
, Mark M. Davis
:
SIMON: Open-Source Knowledge Discovery Platform. Patterns 2(1): 100178 (2021) - 2020
- [j4]Vinícius da Silva
, Marcel Ramos
, Martien Groenen
, Richard Crooijmans, Anna Johansson
, Luciana C. A. Regitano
, Luiz Coutinho, Ralf Zimmer
, Levi Waldron
, Ludwig Geistlinger
:
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. Bioinform. 36(3): 972-973 (2020)
2010 – 2019
- 2018
- [i1]Sean R. Davis
, Marcel Ramos
, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan
, Benjamin Haibe-Kains
, Levi Waldron
:
Orchestrating a community-developed computational workshop and accompanying training materials. F1000Research 7: 1656 (2018) - 2016
- [j3]Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer
:
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis. BMC Bioinform. 17: 45 (2016) - 2015
- [j2]Tobias Petri, Stefan Altmann
, Ludwig Geistlinger, Ralf Zimmer
, Robert Küffner:
Addressing false discoveries in network inference. Bioinform. 31(17): 2836-2843 (2015) - 2011
- [j1]Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder
, Ralf Zimmer
:
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinform. 27(13): 366-373 (2011)
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