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2020 – today
- 2024
[i1]Wentian Li, Astero Provata, Thomas MacCarthy:
An Exhaustive Study of Two-Node McCulloch-Pitts Networks. CoRR abs/2407.00254 (2024)- 2021
- [j9]Guojun Yu, Yingru Wu, Zhi Duan, Catherine Tang, Haipeng Xing, Matthew D. Scharff, Thomas MacCarthy:
A Bayesian model based computational analysis of the relationship between bisulfite accessible single-stranded DNA in chromatin and somatic hypermutation of immunoglobulin genes. PLoS Comput. Biol. 17(9) (2021)
2010 – 2019
- 2018
- [j8]Maxwell Shapiro, Stephen R. Meier, Thomas MacCarthy
:
The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure. BMC Bioinform. 19(1): 163:1-163:9 (2018) - [j7]Maxwell Shapiro, Stephen R. Meier, Thomas MacCarthy:
Correction to: The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure. BMC Bioinform. 19(1): 256:1-256:2 (2018) - 2017
- [j6]Jeffrey Chen, Thomas MacCarthy:
The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes. PLoS Comput. Biol. 13(3) (2017) - 2015
- [j5]Jeewoen Shin, Thomas MacCarthy:
Antagonistic Coevolution Drives Whack-a-Mole Sensitivity in Gene Regulatory Networks. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j4]Saurabh Gombar, Thomas MacCarthy, Aviv Bergman:
Epigenetics Decouples Mutational from Environmental Robustness. Did It Also Facilitate Multicellularity? PLoS Comput. Biol. 10(3) (2014) - 2013
- [j3]Mario Pujato, Thomas MacCarthy, András Fiser, Aviv Bergman:
The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks. PLoS Comput. Biol. 9(1) (2013)
2000 – 2009
- 2007
- [j2]Aviv Bergman, Gil Atzmon, Kenny Ye, Thomas MacCarthy, Nir Barzilai:
Buffering Mechanisms in Aging: A Systems Approach Toward Uncovering the Genetic Component of Aging. PLoS Comput. Biol. 3(8) (2007) - 2005
- [j1]Thomas MacCarthy, Andrew Pomiankowski, Robert M. Seymour:
Using large-scale perturbations in gene network reconstruction. BMC Bioinform. 6: 11 (2005)
Coauthor Index
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