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Journal Articles
- 2024
[j2]Nitesh Kumar Sharma, Ram Ayyala, Dhrithi Deshpande, Yesha Patel, Viorel Munteanu
, Dumitru Ciorba, Viorel Bostan, Andrada Fiscutean, Mohammad Vahed, Aditya Sarkar, Ruiwei Guo, Andrew Moore, Nicholas Darci-Maher, Nicole Nogoy, Malak S. Abedalthagafi, Serghei Mangul:
Analytical code sharing practices in biomedical research. PeerJ Comput. Sci. 10: e2066 (2024)- 2022
- [j1]Varuni Sarwal, Sebastian Niehus, Ram Ayyala, Minyoung Kim, Aditya Sarkar, Sei Chang, Angela Lu, Neha Rajkumar, Nicholas Darci-Maher, Russell Littman, Karishma Chhugani, Arda Soylev, Zoia Comarova, Emily E. Wesel, Jacqueline Castellanos, Rahul Chikka, Margaret G. Distler, Eleazar Eskin, Jonathan Flint, Serghei Mangul:
A comprehensive benchmarking of WGS-based deletion structural variant callers. Briefings Bioinform. 23(4) (2022)
Conference and Workshop Papers
- 2021
- [c1]Sergey Knyazev, Daniel Novikov, Mark Grinshpon, Harman Singh, Ram Ayyala, Varuni Sarwal, Roya Hosseini, Pelin Icer Baykal, Pavel Skums, Ellsworth Campbell, Serghei Mangul, Alex Zelikovsky:
A Novel Network Representation of SARS-CoV-2 Sequencing Data. ISBRA 2021: 165-175
Informal and Other Publications
- 2022
- [i1]Mohammed Alser, Sharon Waymost, Ram Ayyala, Brendan Lawlor, Richard J. Abdill, Neha Rajkumar, Nathan LaPierre, Jaqueline J. Brito, Andre M. Ribeiro-dos-Santos, Can Firtina, Nour Almadhoun, Varuni Sarwal, Eleazar Eskin, Qiyang Hu, Derek Strong, Byoung-Do Kim, Malak S. Abedalthagafi, Onur Mutlu, Serghei Mangul:
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities. CoRR abs/2203.16261 (2022)
Coauthor Index
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