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ORCIDRoman A. Laskowski
Person information
- affiliation: European Bioinformatics Institute, UK
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Journal Articles
- 2020
[j26]Rodrigo Ochoa
, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton:
An automated protocol for modelling peptide substrates to proteases. BMC Bioinform. 21(1): 586 (2020)- [j25]Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu:
MGOS: A library for molecular geometry and its operating system. Comput. Phys. Commun. 251: 107101 (2020) - 2019
- [j24]James D. Stephenson, Roman A. Laskowski, Andrew Nightingale, Matthew E. Hurles, Janet M. Thornton:
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations. Bioinform. 35(22): 4854-4856 (2019) - 2016
- [j23]Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim:
BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization. Nucleic Acids Res. 44(Webserver-Issue): W416-W423 (2016) - 2015
- [j22]Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo:
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43(Database-Issue): 376-381 (2015) - [j21]Jae-Kwan Kim, Youngsong Cho, Mokwon Lee, Roman A. Laskowski, Seong Eon Ryu, Kokichi Sugihara, Deok-Soo Kim:
BetaCavityWeb: a webserver for molecular voids and channels. Nucleic Acids Res. 43(Webserver-Issue): W413-W418 (2015) - 2014
- [j20]Lukás Pravda, Karel Berka, Radka Svobodová Vareková, David Sehnal, Pavel Banás, Roman A. Laskowski, Jaroslav Koca, Michal Otyepka:
Anatomy of enzyme channels. BMC Bioinform. 15: 379 (2014) - [j19]Tjaart A. P. de Beer, Karel Berka, Janet M. Thornton, Roman A. Laskowski:
PDBsum additions. Nucleic Acids Res. 42(Database-Issue): 292-296 (2014) - 2013
- [j18]Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton:
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j17]Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Syed Asad Rahman, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton:
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. Nucleic Acids Res. 40(Database-Issue): 776-782 (2012) - [j16]Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton:
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies. PLoS Comput. Biol. 8(3) (2012) - 2011
- [j15]Roman A. Laskowski, Mark B. Swindells:
LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery. J. Chem. Inf. Model. 51(10): 2778-2786 (2011) - 2010
- [j14]Asif U. Tamuri, Roman A. Laskowski:
ArchSchema: a tool for interactive graphing of related Pfam domain architectures. Bioinform. 26(9): 1260-1261 (2010) - 2009
- [j13]David Talavera, Roman A. Laskowski, Janet M. Thornton:
WSsas: a web service for the annotation of functional residues through structural homologues. Bioinform. 25(9): 1192-1194 (2009) - [j12]Roman A. Laskowski:
PDBsum new things. Nucleic Acids Res. 37(Database-Issue): 355-359 (2009) - [j11]John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser:
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure. PLoS Comput. Biol. 5(12) (2009) - 2007
- [j10]Roman A. Laskowski:
Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature. Bioinform. 23(14): 1824-1827 (2007) - [j9]Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton:
Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. BMC Bioinform. 8(S-8) (2007) - 2005
- [j8]Roman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton:
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res. 33(Database-Issue): 266-268 (2005) - [j7]Roman A. Laskowski, James D. Watson, Janet M. Thornton:
ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res. 33(Web-Server-Issue): 89-93 (2005) - 2002
- [j6]M. Mar Albà, Roman A. Laskowski, John M. Hancock:
Detecting cryptically simple protein sequences using the SIMPLE algorithm. Bioinform. 18(5): 672-678 (2002) - 2001
- [j5]Roman A. Laskowski:
PDBsum: summaries and analyses of PDB structures. Nucleic Acids Res. 29(1): 221-222 (2001) - [j4]Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton:
Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. Nucleic Acids Res. 29(13): 2860-2874 (2001) - 1999
- [j3]John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton:
BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. J. Comput. Chem. 20(11): 1165-1176 (1999) - [j2]John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton:
BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. J. Comput. Chem. 20(11): 1177-1185 (1999) - 1998
- [j1]Fabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert:
Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. J. Comput. Aided Mol. Des. 12(3): 241-257 (1998)
Conference and Workshop Papers
- 1998
- [c1]Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski:
[Invited Lecture] Protein Folds and Functions. German Conference on Bioinformatics 1998
Informal and Other Publications
- 2019
- [i1]Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu:
MGOS: A Library for Molecular Geometry and its Operating System. CoRR abs/1906.12141 (2019)
Coauthor Index
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