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Alexei J. Drummond
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2020 – today
- 2023
- [j15]Alexei J. Drummond
, Kylie Chen
, Fábio K. Mendes
, Dong Xie
:
LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses. PLoS Comput. Biol. 19(7) (2023) - 2021
- [i1]Alexei J. Drummond, Alex Popinga:
Bayesian inference of the climbing grade scale. CoRR abs/2111.08140 (2021) - 2020
- [j14]Jordan Douglas
, Richard Kingston
, Alexei J. Drummond:
Bayesian inference and comparison of stochastic transcription elongation models. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2019
- [j13]Remco R. Bouckaert
, Timothy G. Vaughan, Joëlle Barido-Sottani
, Sebastián Duchêne
, Mathieu Fourment
, Alexandra Gavryushkina, Joseph Heled
, Graham Jones
, Denise Kühnert
, Nicola De Maio
, Michael Matschiner
, Fábio K. Mendes
, Nicola F. Müller
, Huw A. Ogilvie
, Louis du Plessis
, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni
, Marc A. Suchard
, Chieh-Hsi Wu
, Dong Xie, Chi Zhang
, Tanja Stadler
, Alexei J. Drummond
:
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 15(4) (2019) - [j12]Jing Yang
, Nicola F. Müller, Remco R. Bouckaert, Bing Xu
, Alexei J. Drummond
:
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration. PLoS Comput. Biol. 15(8) (2019) - 2014
- [j11]Timothy G. Vaughan, Denise Kühnert
, Alex Popinga, David Welch
, Alexei J. Drummond
:
Efficient Bayesian inference under the structured coalescent. Bioinform. 30(16): 2272-2279 (2014) - [j10]Remco R. Bouckaert, Joseph Heled, Denise Kühnert
, Timothy G. Vaughan, Chieh-Hsi Wu
, Dong Xie, Marc A. Suchard, Andrew Rambaut
, Alexei J. Drummond
:
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Comput. Biol. 10(4) (2014) - [j9]Bram Vrancken
, Andrew Rambaut
, Marc A. Suchard, Alexei J. Drummond
, Guy Baele
, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme
, Kristel Van Laethem
, Philippe Lemey:
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates. PLoS Comput. Biol. 10(4) (2014) - [j8]Alexandra Gavryushkina, David Welch
, Tanja Stadler
, Alexei J. Drummond
:
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j7]Alexandra Gavryushkina, David Welch
, Alexei J. Drummond
:
Recursive algorithms for phylogenetic tree counting. Algorithms Mol. Biol. 8: 26 (2013) - [c4]Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey:
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework. IWBBIO 2013: 555-556 - 2012
- [j6]Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane S. Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran, Tobias Thierer, Bruce Ashton, Peter L. Meintjes, Alexei J. Drummond
:
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinform. 28(12): 1647-1649 (2012) - 2010
- [j5]Timothy G. Vaughan, Peter D. Drummond
, Alexei J. Drummond
:
A retrodictive stochastic simulation algorithm. J. Comput. Phys. 229(10): 3777-3791 (2010)
2000 – 2009
- 2009
- [j4]Philippe Lemey, Andrew Rambaut
, Alexei J. Drummond
, Marc A. Suchard:
Bayesian Phylogeography Finds Its Roots. PLoS Comput. Biol. 5(9) (2009) - 2008
- [c3]Sebastian Höhna, Michael Defoin-Platel, Alexei J. Drummond:
Clock-constrained tree proposal operators in Bayesian phylogenetic inference. BIBE 2008: 1-7 - 2007
- [j3]Philippe Lemey, Sergei L. Kosakovsky Pond, Alexei J. Drummond
, Oliver G. Pybus
, Beth Shapiro, Helena Barroso
, Nuno Taveira
, Andrew Rambaut
:
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics. PLoS Comput. Biol. 3(2) (2007) - 2005
- [j2]Gerton Lunter
, István Miklós, Alexei J. Drummond
, Jens Ledet Jensen
, Jotun Hein:
Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinform. 6: 83 (2005) - 2004
- [c2]Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo:
A Brief Introduction to the Phylogentics Analysis Library V1.5. APBC 2004: 175-179 - 2003
- [c1]Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen
, Jotun Hein:
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. WABI 2003: 228-244 - 2001
- [j1]Alexei J. Drummond, Korbinian Strimmer:
PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinform. 17(7): 662-663 (2001)
Coauthor Index
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