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2020 – today
- 2025
[j18]Ruiqi Liu, Shankai Yan, Zilong Zhang, Junlin Xu, Yajie Meng
, Qingchen Zhang, Leyi Wei, Quan Zou, Feifei Cui:
PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model. Comput. Biol. Chem. 118: 108448 (2025)- [j17]Aoyun Geng, Zhenjie Luo, Aohan Li, Zilong Zhang, Quan Zou, Leyi Wei, Feifei Cui:
ACP-CLB: An Anticancer Peptide Prediction Model Based on Multichannel Discriminative Processing and Integration of Large Pretrained Protein Language Models. J. Chem. Inf. Model. 65(5): 2336-2349 (2025) - [j16]Shuwen Xiong, Jiajie Cai, Hua Shi, Feifei Cui, Zilong Zhang, Leyi Wei:
UMPPI: Unveiling Multilevel Protein-Peptide Interaction Prediction via Language Models. J. Chem. Inf. Model. 65(7): 3789-3799 (2025) - [j15]Xu Ma, Jialong Lai, Zhicheng Zhong, Feifei Cui:
FERA-Net: A Novel Algorithm for Mars Water-Ice Cloud Segmentation Integrating Feature Enhancement, Residual, and Attention Mechanisms. IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens. 18: 3797-3811 (2025) - 2024
- [j14]Chaorui Yan, Aoyun Geng, Zhuoyu Pan, Zilong Zhang, Feifei Cui:
MultiFeatVotPIP: a voting-based ensemble learning framework for predicting proinflammatory peptides. Briefings Bioinform. 25(6) (2024) - [j13]Hao Duan, Yu Zhang, Haoye Qiu, Xiuhao Fu, Chunling Liu, Xiaofeng Zang, Anqi Xu, Ziyue Wu, Xingfeng Li, Qingchen Zhang, Zilong Zhang, Feifei Cui:
Machine learning-based prediction model for distant metastasis of breast cancer. Comput. Biol. Medicine 169: 107943 (2024) - [j12]Zheyu Zhou, Cuilin Xiao, Jinfen Yin, Jiayi She, Hao Duan, Chunling Liu, Xiuhao Fu, Feifei Cui, Qi Qi, Zilong Zhang:
PSAC-6mA: 6mA site identifier using self-attention capsule network based on sequence-positioning. Comput. Biol. Medicine 171: 108129 (2024) - [j11]Hao Duan, Qingchen Zhang, Feifei Cui, Quan Zou, Zilong Zhang:
MVST: Identifying spatial domains of spatial transcriptomes from multiple views using multi-view graph convolutional networks. PLoS Comput. Biol. 20(9): 1012409 (2024) - [j10]Dou An, Feiye Zhang, Feifei Cui, Qingyu Yang:
Toward Data Integrity Attacks Against Distributed Dynamic State Estimation in Smart Grid. IEEE Trans Autom. Sci. Eng. 21(1): 881-894 (2024) - [j9]Xiuhao Fu, Hao Duan, Xiaofeng Zang, Chunling Liu, Xingfeng Li, Qingchen Zhang, Zilong Zhang, Quan Zou, Feifei Cui:
Hyb_SEnc: An Antituberculosis Peptide Predictor Based on a Hybrid Feature Vector and Stacked Ensemble Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 21(6): 1897-1910 (2024) - [c4]Xingfeng Li, Xiaohan Shi, Yuke Si, Zilong Zhang, Feifei Cui, Yongwei Li, Yang Liu, Masashi Unoki, Masato Akagi:
BEES: A New Acoustic Task for Blended Emotion Estimation in Speech. APSIPA 2024: 1-6 - [c3]Jiahao Yuan, Xingfeng Li, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui:
RNASite: A one-stop tool website that integrates multiple RNA modification site databases and servers. BIBM 2024: 2816-2820 - 2023
- [c2]Ruiqi Liu, Zilong Zhang, Xiuhao Fu, Shankai Yan, Feifei Cui:
AIPPT: Predicts anti-inflammatory peptides using the most characteristic subset of bases and sequences by stacking ensemble learning strategies. BIBM 2023: 23-29 - [c1]Yunyun Su, Feifei Cui, Shiyu Yan, Quan Zou, Chen Cao, Zilong Zhang:
Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. BIBM 2023: 293-298 - 2022
- [j8]Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou:
webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. Bioinform. 38(13): 3488-3489 (2022) - [j7]Zilong Zhang, Feifei Cui, Chen Cao, Qingsuo Wang, Quan Zou:
Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections. Comput. Biol. Medicine 140: 105092 (2022) - [j6]Chen Cao, Jianhua Wang, Devin Kwok, Feifei Cui, Zilong Zhang, Da Zhao, Mulin Jun Li, Quan Zou:
webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. Nucleic Acids Res. 50(D1): 1123-1130 (2022) - 2021
- [j5]Feifei Cui, Quan Zou, Qin Ma, Leyi Wei, Jijun Tang, Dariusz Mrozek:
IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis. IEEE Access 9: 33110-33119 (2021) - [j4]Zhibin Lv, Feifei Cui, Quan Zou, Lichao Zhang, Lei Xu:
Anticancer peptides prediction with deep representation learning features. Briefings Bioinform. 22(5) (2021) - [j3]Zilong Zhang, Feifei Cui, Chen Lin, Lingling Zhao, Chunyu Wang, Quan Zou:
Critical downstream analysis steps for single-cell RNA sequencing data. Briefings Bioinform. 22(5) (2021) - [j2]Feifei Cui, Murong Zhou, Quan Zou:
Computational biology and chemistry Special section editorial: Computational analyses for miRNA. Comput. Biol. Chem. 91: 107448 (2021) - [j1]Jialong Lai, Feifei Cui, Yi Xu, Chaofei Liu, Ling Zhang:
Dielectric Properties of Lunar Materials at the Chang'e-4 Landing Site. Remote. Sens. 13(20): 4056 (2021)
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