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2020 – today
- 2026
[j27]Ziyuan Yan, Aoyun Geng
, Yazi Li, Jiajing Wang, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Zilong Zhang, Feifei Cui:
CNNCaps-DBP: Leveraging protein language models with attention-augmented convolution for DNA-binding protein prediction. Neural Networks 195: 108261 (2026)- [j26]Jinwei Wang, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Shankai Yan, Leyi Wei, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui:
DeepNhKcr: Explainable Deep Learning Framework for the Prediction of Crotonylation Sites of Non-Histone Lysine in Plants Based on Pre-Trained Protein Language Model. IEEE Trans. Comput. Biol. Bioinform. 23(1): 326-340 (2026) - [j25]Yajie Meng, Zhuang Zhang, Xudong Shang, Xianfang Tang, Jincan Li, Zilong Zhang, Feifei Cui, Shuting Jin, Junlin Xu, Peng Wang:
FusionMVSA: Multi-View Fusion Strategy With Self-Attention for Enhancing Drug Recommendation. IEEE J. Biomed. Health Informatics 30(2): 1746-1758 (2026) - 2025
- [j24]Xianfang Tang, Yawen Hou, Yajie Meng, Zhaojing Wang, Changcheng Lu, Juan Lv, Xinrong Hu, Junlin Xu, Jialiang Yang:
CDPMF-DDA: contrastive deep probabilistic matrix factorization for drug-disease association prediction. BMC Bioinform. 26(1): 5 (2025) - [j23]Ruiqi Liu, Shankai Yan, Zilong Zhang, Junlin Xu, Yajie Meng, Qingchen Zhang, Leyi Wei, Quan Zou, Feifei Cui:
PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model. Comput. Biol. Chem. 118: 108448 (2025) - [j22]Yi Wang, Yajie Meng, Chang Zhou, Xianfang Tang, Pan Zeng, Chu Pan, Qiang Zhu, Bengong Zhang, Junlin Xu:
Automatic collaborative learning for drug repositioning. Eng. Appl. Artif. Intell. 139: 109653 (2025) - [j21]Pan Zeng, Ling You, Bofei Zhang, Yajie Meng, Xianfang Tang, Zilong Zhang, Feifei Cui, Jing Jiang, Junlin Xu:
Enhanced drug recommendation model with graph contrastive based on singular value decomposition. Eng. Appl. Artif. Intell. 162: 112674 (2025) - [j20]Yajie Meng, Yi Wang, Xinrong Hu, Changcheng Lu, Xianfang Tang, Feifei Cui, Pan Zeng, Yuhua Yao, Jialiang Yang, Junlin Xu:
Adaptive debiasing learning for drug repositioning. J. Biomed. Informatics 167: 104843 (2025) - [j19]Siying Yang, Ping-an He, Pan Zeng, Yajie Meng, Zilong Zhang, Feifei Cui, Yuhua Yao, Jialiang Yang, Junlin Xu:
Predicting drug-target interactions based on multivariate information fusion and graph contrast learning. J. Biomed. Informatics 172: 104960 (2025) - [j18]Yuanhao Li, Aoyun Geng, Zheyu Zhou, Feifei Cui, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Qingchen Zhang, Zilong Zhang:
AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction. J. Chem. Inf. Model. 65(12): 5868-5886 (2025) - [j17]Xinyu Li, Zhenjie Luo, Jingwei Lv, Chao Yang, Shankai Yan, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui:
m5U-HybridNet: Integrating an RNA Foundation Model with CNN Features for Accurate Prediction of 5-Methyluridine Modification Sites. J. Chem. Inf. Model. 65(15): 8079-8096 (2025) - [j16]Qianmao Wen, Aoyun Geng, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui:
DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms. J. Chem. Inf. Model. 65(19): 10011-10024 (2025) - [j15]Yajie Meng, Zhuang Zhang, Jincan Li, Xianfang Tang, Changcheng Lu, Zilong Zhang, Feifei Cui, Pan Zeng, Bo Li, Junlin Xu:
ML-PLA: Enhancing Protein-Ligand Binding Affinity Prediction with Microenvironment and Long-Range Interaction-Aware Graph Neural Networks. J. Chem. Inf. Model. 65(20): 10988-10998 (2025) - [j14]Jiaxing Song, Aoyun Geng, Qianmao Wen, Junlin Xu, Yajie Meng, Feifei Cui, Quan Zou, Leyi Wei, Zilong Zhang:
AcidProNet: Acidophilic Protein Classification via DCGAN-GP-Based Data Augmentation and Parameter-Shared Mixture-of-Experts Transformer. J. Chem. Inf. Model. 65(24): 13145-13162 (2025) - [j13]Xianfang Tang, Chang Zhou, Changcheng Lu, Yajie Meng, Junlin Xu, Xinrong Hu, Geng Tian, Jialiang Yang:
Enhancing Drug Repositioning Through Local Interactive Learning With Bilinear Attention Networks. IEEE J. Biomed. Health Informatics 29(3): 1644-1655 (2025) - [j12]Xianfang Tang, Jincan Li, Qianrui Liu, Chang Zhou, Pan Zeng, Yajie Meng, Junlin Xu, Geng Tian, Jialiang Yang:
SWMA-UNet: Multi-Path Attention Network for Improved Medical Image Segmentation. IEEE J. Biomed. Health Informatics 29(5): 3609-3618 (2025) - 2024
- [j11]Yajie Meng, Yi Wang, Junlin Xu, Changcheng Lu, Xianfang Tang, Tao Peng, Ben-gong Zhang, Geng Tian, Jialiang Yang:
Drug repositioning based on weighted local information augmented graph neural network. Briefings Bioinform. 25(1) (2024) - [j10]Qiang Zhu, Cheng Hong, Yajie Meng, Huali Yang, Weizhong Zhao:
Joint extraction of biomedical overlapping triples through feature partition encoding. Expert Syst. Appl. 241: 122723 (2024) - [j9]Pan Zeng, Bofei Zhang, Aohang Liu, Yajie Meng, Xianfang Tang, Jialiang Yang, Junlin Xu:
Drug repositioning based on tripartite cross-network embedding and graph convolutional network. Expert Syst. Appl. 252: 124152 (2024) - 2023
- [c1]Shuaishuai Yang, Min Jin, Lian Wang, Changcheng Lu, Yajie Meng, Die Yan, Zhijian Huang, Junlin Xu:
Medical Image Segmentation Using Dual Branch Networks with Embedded Attention Mechanism. BIBM 2023: 1620-1626 - 2022
- [j8]Yajie Meng, Changcheng Lu, Min Jin, Junlin Xu, Xiangxiang Zeng, Jialiang Yang:
A weighted bilinear neural collaborative filtering approach for drug repositioning. Briefings Bioinform. 23(2) (2022) - [j7]Junlin Xu, Lingyu Cui, Jujuan Zhuang, Yajie Meng, Pingping Bing, Binsheng He, Geng Tian, Choi Kwok Pui, Taoyang Wu, Bing Wang, Jialiang Yang:
Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. Comput. Biol. Medicine 146: 105697 (2022) - 2021
- [j6]Xianfang Tang, Lijun Cai, Yajie Meng, Changlong Gu, Jialiang Yang, Jiasheng Yang:
A Novel Hybrid Feature Selection and Ensemble Learning Framework for Unbalanced Cancer Data Diagnosis With Transcriptome and Functional Proteomic. IEEE Access 9: 51659-51668 (2021) - [j5]Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu:
Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study. Appl. Soft Comput. 103: 107135 (2021) - [j4]Lijun Cai, Changcheng Lu, Junlin Xu, Yajie Meng, Peng Wang, Xiangzheng Fu, Xiangxiang Zeng, Yansen Su:
Drug repositioning based on the heterogeneous information fusion graph convolutional network. Briefings Bioinform. 22(6) (2021) - [j3]Ruirui Liu, Hong Lin Zhai, Yajie Meng, Min Zhu, Tao Wen, Nengzhi Jin:
Adsorption Behaviors of Typical Proteins on BP, GR, and C2N Surfaces. J. Chem. Inf. Model. 61(3): 1300-1306 (2021) - 2020
- [j2]Junlin Xu, Wen Zhu, Lijun Cai, Bo Liao, Yajie Meng, Ju Xiang, Dawei Yuan, Geng Tian, Jialiang Yang:
LRMCMDA: Predicting miRNA-Disease Association by Integrating Low-Rank Matrix Completion With miRNA and Disease Similarity Information. IEEE Access 8: 80728-80738 (2020) - [j1]Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu:
Degree-Based Similarity Indexes for Identifying Potential miRNA-Disease Associations. IEEE Access 8: 133170-133179 (2020)
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last updated on 2026-02-20 01:34 CET by the dblp team
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