default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDMark S. Alber
Person information
- affiliation: University of California Riverside, CA, USA
- affiliation (former): University of Notre Dame, IN, USA
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
[i2]Md Shazid Islam, Arindam Dutta, Calvin-Khang Ta, Kevin Rodriguez, Christian Michael, Mark S. Alber, G. Venugopala Reddy, Amit K. Roy-Chowdhury:
Learning Deformable 3D Graph Similarity to Track Plant Cells in Unregistered Time Lapse Images. CoRR abs/2309.11157 (2023)- 2022
- [j22]Mikahl Banwarth-Kuhn
, Kevin Rodriguez, Christian Michael, Calvin-Khang Ta, Alexander Plong, Eric Bourgain-Chang, Ali Nematbakhsh, Weitao Chen, Amit K. Roy-Chowdhury, G. Venugopala Reddy, Mark S. Alber:
Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j21]Noelia Grande Gutiérrez, Mark S. Alber, Andrew M. Kahn, Jane C. Burns, Mathew Mathew, Brian W. McCrindle, Alison L. Marsden:
Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j20]Ali Nematbakhsh, Megan Levis, Nilay Kumar, Weitao Chen, Jeremiah J. Zartman, Mark S. Alber:
Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix. PLoS Comput. Biol. 16(8) (2020)
2010 – 2019
- 2019
- [j19]Mark S. Alber, Adrian Buganza Tepole, William R. Cannon, Suvranu De, Salvador Dura-Bernal, Krishna C. Garikipati, George E. Karniadakis, William W. Lytton, Paris Perdikaris, Linda R. Petzold, Ellen Kuhl:
Integrating machine learning and multiscale modeling - perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences. npj Digit. Medicine 2 (2019) - 2017
- [j18]Ali Nematbakhsh, Wenzhao Sun, Pavel A. Brodskiy, Aboutaleb Amiri, Cody Narciso, Zhiliang Xu, Jeremiah J. Zartman, Mark S. Alber:
Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia. PLoS Comput. Biol. 13(5) (2017) - 2016
- [j17]Jianxu Chen, Mark S. Alber, Danny Ziyi Chen:
A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus Swarms. IEEE Trans. Medical Imaging 35(9): 2074-2084 (2016) - [c15]Jianxu Chen, Yiqing Cai, Chen Wei, Lin Yang, Mark S. Alber, Danny Ziyi Chen:
Segmentation and tracking of Pseudomonas aeruginosa for cell dynamics analysis in time-lapse images. ISBI 2016: 968-971 - [c14]Jianxu Chen, Lin Yang, Yizhe Zhang, Mark S. Alber, Danny Ziyi Chen:
Combining Fully Convolutional and Recurrent Neural Networks for 3D Biomedical Image Segmentation. NIPS 2016: 3036-3044 - [i1]Jianxu Chen, Lin Yang, Yizhe Zhang, Mark S. Alber, Danny Z. Chen:
Combining Fully Convolutional and Recurrent Neural Networks for 3D Biomedical Image Segmentation. CoRR abs/1609.01006 (2016) - 2015
- [c13]Jianxu Chen, Shant Mahserejian, Mark S. Alber, Danny Z. Chen:
A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus Swarms. MICCAI (3) 2015: 284-291 - 2014
- [c12]Jianxu Chen, Oleg V. Kim, Rustem I. Litvinov, John W. Weisel, Mark S. Alber, Danny Ziyi Chen:
An Automated Approach for Fibrin Network Segmentation and Structure Identification in 3D Confocal Microscopy Images. CBMS 2014: 173-178 - [c11]Jianxu Chen, Cameron W. Harvey, Mark S. Alber, Danny Ziyi Chen:
A Matching Model Based on Earth Mover's Distance for Tracking Myxococcus Xanthus. MICCAI (2) 2014: 113-120 - 2013
- [j16]Oleg V. Kim, Zhiliang Xu, Elliot D. Rosen, Mark S. Alber:
Fibrin Networks Regulate Protein Transport during Thrombus Development. PLoS Comput. Biol. 9(6) (2013) - 2012
- [j15]Cameron W. Harvey, Huijing Du, Zhiliang Xu, Dale Kaiser, Igor S. Aranson, Mark S. Alber:
Interconnected Cavernous Structure of Bacterial Fruiting Bodies. PLoS Comput. Biol. 8(12) (2012) - [c10]Xiaomin Liu, Cameron W. Harvey, Haitao Wang, Mark S. Alber, Danny Z. Chen:
Detecting and Tracking Motion of Myxococcus xanthus Bacteria in Swarms. MICCAI (1) 2012: 373-380 - [c9]Xiaomin Liu, Jian Mu, Kellie R. Machlus, Alisa S. Wolberg, Elliot D. Rosen, Zhiliang Xu, Mark S. Alber, Danny Z. Chen:
Automatic segmentation and analysis of fibrin networks in 3D confocal microscopy images. Medical Imaging: Image Processing 2012: 831439 - 2011
- [c8]Xiaomin Liu, Alvernia F. Setiadi, Mark S. Alber, Peter P. Lee, Danny Z. Chen:
Identification and classification of cells in multispectral microscopy images of lymph nodes. Medical Imaging: Image Processing 2011: 79620J - 2010
- [j14]Jian Mu, Xiaomin Liu, Malgorzata M. Kamocka, Zhiliang Xu, Mark S. Alber, Elliot D. Rosen, Danny Z. Chen:
Segmentation, Reconstruction, and Analysis of Blood Thrombus Formation in 3D 2-Photon Microscopy Images. EURASIP J. Adv. Signal Process. 2010 (2010) - [j13]Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, Jesús A. Izaguirre:
Belief propagation estimation of protein and domain interactions using the sum-product algorithm. IEEE Trans. Inf. Theory 56(2): 742-755 (2010) - [c7]Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, Jesús A. Izaguirre:
Estimation of Protein and Domain Interactions in the Switching Motility System of Myxococcus Xanthus. Pacific Symposium on Biocomputing 2010: 157-165
2000 – 2009
- 2009
- [j12]Mark S. Alber, Richard Gejji, Bogdan Kazmierczak:
Existence of global solutions of a macroscopic model of cellular motion in a chemotactic field. Appl. Math. Lett. 22(11): 1645-1648 (2009) - [j11]Jianfeng Zhu, Yong-Tao Zhang, Stuart A. Newman, Mark S. Alber:
Application of Discontinuous Galerkin Methods for Reaction-Diffusion Systems in Developmental Biology. J. Sci. Comput. 40(1-3): 391-418 (2009) - [c6]Jian Mu, Xiaomin Liu, Malgorzata M. Kamocka, Zhiliang Xu, Mark S. Alber, Elliot D. Rosen, Danny Z. Chen:
Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images. CBMS 2009: 1-8 - 2007
- [j10]Scott Christley, Xuelian Zhu, Stuart A. Newman, Mark S. Alber:
Multiscale Agent-based Simulation for Chondrogenic Pattern Formation in Vitro. Cybern. Syst. 38(7): 707-727 (2007) - [j9]Nan Chen, James A. Glazier, Jesús A. Izaguirre, Mark S. Alber:
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis. Comput. Phys. Commun. 176(11-12): 670-681 (2007) - [j8]Trevor M. Cickovski, Kedar Aras, Maciej Swat, Roeland Merks, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre:
From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development. Comput. Sci. Eng. 9(4): 50-60 (2007) - [j7]Scott Christley, Mark S. Alber, Stuart A. Newman:
Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model. PLoS Comput. Biol. 3(4) (2007) - [j6]Yilin Wu, Yi Jiang, Dale Kaiser, Mark S. Alber:
Social Interactions in Myxobacterial Swarming. PLoS Comput. Biol. 3(12) (2007) - 2006
- [j5]Yi Jiang, Olga Sozinova, Mark S. Alber:
On Modeling Complex Collective Behavior in Myxobacteria. Adv. Complex Syst. 9(4): 353-367 (2006) - [c5]Nan Chen, James A. Glazier, Mark S. Alber:
A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis. ACRI 2006: 58-67 - [c4]Yilin Wu, Nan Chen, Matthew Rissler, Yi Jiang, Dale Kaiser, Mark S. Alber:
CA Models of Myxobacteria Swarming. ACRI 2006: 192-203 - 2005
- [j4]Mark S. Alber, Thomas Yizhao Hou, James A. Glazier, Yi Jiang:
Special Issue on Multiscale Modeling in Biology. Multiscale Model. Simul. 3(2) (2005) - [j3]Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre:
A Framework for Three-Dimensional Simulation of Morphogenesis. IEEE ACM Trans. Comput. Biol. Bioinform. 2(4): 273-288 (2005) - 2004
- [j2]Jesús A. Izaguirre, Rajiv Chaturvedi, Chengbang Huang, Trevor M. Cickovski, J. Coffland, Gilberto L. Thomas, Gabor Forgacs, Mark S. Alber, H. George E. Hentschel, Stuart A. Newman, James A. Glazier:
COMPUCELL, a multi-model framework for simulation of morphogenesis. Bioinform. 20(7): 1129-1137 (2004) - [c3]Rajiv Chaturvedi, Chengbang Huang, Jesús A. Izaguirre, Stuart A. Newman, James A. Glazier, Mark S. Alber:
A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb. ACRI 2004: 543-552 - [c2]Arancha Casal, Cenk Sumen, Tim Reddy, Mark S. Alber, Peter P. Lee:
A Cellular Automata Model of Early T Cell Recognition. ACRI 2004: 553-560 - 2003
- [c1]Rajiv Chaturvedi, Jesús A. Izaguirre, Chengbang Huang, Trevor M. Cickovski, P. Virtue, Gilberto L. Thomas, Gabor Forgacs, Mark S. Alber, H. George E. Hentschel, Stuart A. Newman, James A. Glazier:
Multi-model Simulations of Chicken Limb Morphogenesis. International Conference on Computational Science 2003: 39-49 - [p1]Mark S. Alber, Maria A. Kiskowski, James A. Glazier, Yi Jiang:
On Cellular Automaton Approaches to Modeling Biological Cells. Mathematical Systems Theory in Biology, Communications, Computation, and Finance 2003: 1-39 - 2001
- [j1]Mark S. Alber, Charles Miller:
Peakon solutions of the shallow water equation. Appl. Math. Lett. 14(1): 93-98 (2001)
Coauthor Index
aka: Danny Z. Chen
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:08 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
