Computer Physics Communications, Volume 176

Volume 176, Number 1, January 2007

Computational physics

• 
  Christoph Freysoldt, Philipp Eggert, Patrick Rinke, Arno Schindlmayr, R. W. Godby, Matthias Scheffler:
  Dielectric anisotropy in the GW space-time method. 1-13
• 
  Michael Patra, Marja T. Hyvönen, Emma Falck, Mohsen Sabouri-Ghomi, Ilpo Vattulainen, Mikko Karttunen:
  Long-range interactions and parallel scalability in molecular simulations. 14-22
• 
  Magdi Shoucri:
  Numerical solution of the shallow water equations with a fractional step method. 23-32

Computer programs in physics

• 
  Dragana Krstic, Dragoslav Nikezic:
  Input files with ORNL - mathematical phantoms of the human body for MCNP-4B. 33-37
• 
  Marco Patriarca, A. Kuronen, Miguel Robles, Kimmo Kaski:
  Three-dimensional interactive Molecular Dynamics program for the study of defect dynamics in crystals. 38-47
• 
  Alexei F. Cheviakov:
  GeM software package for computation of symmetries and conservation laws of differential equations. 48-61
• 
  S. Kadamani, A. D. Snider:
  USFKAD: An expert system for partial differential equations. 62-69

New version announcements

• 
  Andrzej Daniluk:
  An extension of the computer program for dynamical calculations of RHEED intensity oscillations. Heterostructures. 70-73

Volume 176, Number 2, January 2007

Computational Physics

• 
  Christophe Besse, Jean Claudel, Pierre Degond, Fabrice Deluzet, Gérard Gallice, Christian Tessieras:
  Numerical simulations of the ionospheric striation model in a non-uniform magnetic field. 75-90
• 
  Harvey Meyer, Hubert Simma, Rainer Sommer, Michele Della Morte, Oliver Witzel, Ulli Wolff:
  Exploring the HMC trajectory-length dependence of autocorrelation times in lattice QCD. 91-97
• 
  M. S. Zakynthinaki, James Robert Stirling:
  Stochastic optimization for modeling physiological time series: application to the heart rate response to exercise. 98-108
• 
  Zdzislaw Meglicki, Stephen K. Gray, Boyana Norris:
  Multigrid FDTD with Chombo. 109-120
• 
  Koen De Raedt, Kristel Michielsen, Hans De Raedt, Binh Trieu, Guido Arnold, Marcus Richter, Thomas Lippert, Hiroshi Watanabe, Nobuyasu Ito:
  Massively parallel quantum computer simulator. 121-136
• 
  Tommy Burch, Christian Hagen:
  Domain decomposition improvement of quark propagator estimation. 137-145

Computer Programs in Physics

• 
  Stefano Tonzani:
  FERM3D: A finite element R-matrix electron molecule scattering code. 146-156
• 
  Sam J. Cipolla:
  An improved version of ISICS: a program for calculating K-, L- and M-shell cross sections from PWBA and ECPSSR theory using a personal computer. 157-159

Volume 176, Number 3, February 2007

Computational physics

• 
  Yueqiang Liu:
  Constructing plasma response models from full toroidal magnetohydrodynamic computations. 161-169
• 
  D. de Niem, E. Kührt, Uwe Motschmann:
  A volume-of-fluid method for simulation of compressible axisymmetric multi-material flow. 170-190
• 
  Veerle Ledoux, Marnix Van Daele, Guido Vanden Berghe:
  A numerical procedure to solve the multichannel Schrödinger eigenvalue problem. 191-199
• 
  Keijo Mattila, Jari Hyväluoma, Tuomo Rossi, Mats Aspnäs, Jan Westerholm:
  An efficient swap algorithm for the lattice Boltzmann method. 200-210
• 
  Ugo Becciani, Vincenzo Antonuccio-Delogu, M. Comparato:
  FLY: MPI-2 high resolution code for LSS cosmological simulations. 211-217

Computer programs in physics

• 
  Andrei Afanasev, Eugene Chudakov, Alexander Ilyichev, Vladimir Zykunov:
  MERADGEN 1.0: Monte Carlo generator for the simulation of radiative events in parity conserving doubly-polarized Møller scattering. 218-231
• 
  N. Michel:
  Precise Coulomb wave functions for a wide range of complex l, eta and z. 232-249

Erratum

• 
  Rui P. S. Fartaria, Rodrigo S. Neves, Pedro C. R. Rodrigues, Filomena F. M. Freitas, Fernando M. S. Silva Fernandes:
  Erratum to "A time saving algorithm for the Monte Carlo method of Metropolis" [Computer Physics Communications 175 (2006) 116-121]. 250

Volume 176, Number 4, February 2007

Computational Physics

• 
  Jerzy Grebosz:
  The Cracow code - an interactive method of sophisticated online analysis. 251-265
• 
  N. Mohankumar, A. Natarajan:
  On the evaluation of H and X functions. 266-270
• 
  Guowen Han, Yuefan Deng, James Glimm, Glenn J. Martyna:
  Error and timing analysis of multiple time-step integration methods for molecular dynamics. 271-291
• 
  Aiichiro Nakano:
  Pathfinder: A parallel search algorithm for concerted atomistic events. 292-299
• 
  Johan Alwall, Alessandro Ballestrero, Paolo Bartalini, Sergey Belov, Edward E. Boos, Andy Buckley, Jonathan M. Butterworth, L. Dudko, S. Frixione, L. Garren, S. Gieseke, A. Gusev, I. Hinchliffe, J. Huston, Borut Paul Kersevan, Frank Krauss, Nils Lavesson, Leif Lönnblad, Ezio Maina, Fabio Maltoni:
  A standard format for Les Houches Event Files. 300-304

Computer programs in physics

• 
  A. Grau Carles:
  MICELLE, the micelle size effect on the LS counting efficiency. 305-317
• 
  Moon Hoe Cha:
  NearFar: A computer program for nearside-farside decomposition of heavy-ion elastic scattering amplitude. 318-325

Volume 176, Number 5, March 2007

Computational physics

• 
  Heinrich Fragner:
  Usage of a reconfigurable computer to simulate multiparticle systems. 327-333

Computer programs in physics

• 
  A. F. Ferrari:
  SusyMath: A Mathematica package for quantum superfield calculations. 334-346
• 
  Fermin Garcia, Joel Mesa, João D. T. Arruda-Neto, O. Helene, Vito Vanin, Felix Milian, Airton Deppman, Tulio E. Rodrigues, Oscar Rodriguez:
  The STATFLUX code: a statistical method for calculation of flow and set of parameters, based on the Multiple-Compartment Biokinetical Model. 347-361
• 
  Antoine Bret:
  Beam-plasma dielectric tensor with Mathematica. 362-366
• 
  Geneviève Bélanger, Fawzi Boudjema, Alexander Pukhov, A. Semenov:
  micrOMEGAs2.0: A program to calculate the relic density of dark matter in a generic model. 367-382

Erratum

• 
  Ulli Wolff:
  Erratum to "Monte Carlo errors with less errors" [Computer Physics Communications 156 (2004) 143-153]. 383

Volume 176, Number 6, March 2007

Computational Physics

• 
  M. Tentyukov, J. A. M. Vermaseren:
  Extension of the functionality of the symbolic program FORM by external software. 385-405
• 
  Peter V. Coveney, R. S. Saksena, Stefan J. Zasada, Mark McKeown, Stephen Pickles:
  The application hosting environment: Lightweight middleware for grid-based computational science. 406-418
• 
  L. Gargaté, R. Bingham, Ricardo A. Fonseca, Luís O. Silva:
  dHybrid: A massively parallel code for hybrid simulations of space plasmas. 419-425

Computer programs in Physics

• 
  Abdelhak Djouadi, Jean-Loïc Kneur, Gilbert Moultaka:
  SuSpect: A Fortran code for the Supersymmetric and Higgs particle spectrum in the MSSM. 426-455

Volume 176, Number 7, April 2007

Computational Physics

• 
  Alexander L. Balandin:
  Vector spherical harmonics application to 3-D tomography problem. 457-464
• 
  Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht:
  Relating time complexity of protein folding simulation to approximations of folding time. 465-470
• 
  Fangming Jiang, Mónica S. A. Oliveira, Antonio C. M. Sousa:
  Mesoscale SPH modeling of fluid flow in isotropic porous media. 471-480
• 
  Tongsong Jiang, Li Chen:
  Algebraic algorithms for least squares problem in quaternionic quantum theory. 481-485

Computer programs in physics

• 
  Erhan Okuyan, Ugur Güdükbay, Oguz Gülseren:
  Pattern information extraction from crystal structures. 486-506

Volume 176, Number 8, April 2007

Feature Article

• 
  N. Stanley Scott, Fabienne Jézéquel, Christophe Denis, Jean Marie Chesneaux:
  Numerical 'health check' for scientific codes: the CADNA approach. 507-521

Computational physics

• 
  Ralf Kissmann, Rainer Grauer:
  A low dissipation essentially non-oscillatory central scheme. 522-530
• 
  Bin Fang, Yuefan Deng, Glenn J. Martyna:
  Performance of the 3D FFT on the 6D network torus QCDOC parallel supercomputer. 531-538
• 
  Daniela Tordella, Michele Iovieno, Silvano Massaglia:
  Small scale localization in turbulent flows. A priori tests applied to a possible Large Eddy Simulation of compressible turbulent flows. 539-549
• 
  Kasper Peeters:
  Cadabra: a field-theory motivated symbolic computer algebra system. 550-558

Computer programs in physics

• 
  Charlotte Froese Fischer, Georgio Tachiev, Gediminas Gaigalas, Michel R. Godefroid:
  An MCHF atomic-structure package for large-scale calculations. 559-579

Volume 176, Numbers 9-10, May 2007

Computational physics

• 
  Pouria Pedram, Mahdi Mirzaei, Siamak S. Gousheh:
  Using spectral method as an approximation for solving hyperbolic PDEs. 581-588
• 
  Jonathan L. Bentz, Ryan M. Olson, Mark S. Gordon, Michael W. Schmidt, Ricky A. Kendall:
  Coupled cluster algorithms for networks of shared memory parallel processors. 589-600

Computer programs in physics

• 
  John Kodet, Richard H. Judge:
  A new graphical version of STROTAB: The analysis and fitting of singlet-triplet spectra of asymmetric top molecules in the prolate or oblate limits. 601-616
• 
  T. Radtke, Stephan Fritzsche:
  Simulation of n-qubit quantum systems. III. Quantum operations. 617-633

New version announcements

• 
  B. Mohammed-Azizi, D. E. Medjadi:
  Single particle calculations for a Woods-Saxon potential with triaxial deformations, and large Cartesian oscillator basis (new version code). 634-635

Volume 176, Numbers 11-12, June 2007

Computational physics

• 
  Liviu Gr. Ixaru:
  Efficient computation of the Airy propagators. 637-641
• 
  Koen De Raedt, Hans De Raedt, Kristel Michielsen:
  A computer program to simulate Einstein-Podolsky-Rosen-Bohm experiments with photons. 642-651
• 
  Oliver Gressel, U. Ziegler:
  Shearingbox-implementation for the central-upwind, constraint-transport MHD-code NIRVANA. 652-659
• 
  Gianni De Fabritiis:
  Performance of the Cell processor for biomolecular simulations. 660-664
• 
  N. Mohankumar:
  Two new series for the Fermi-Dirac integral. 665-669
• 
  Nan Chen, James A. Glazier, Jesús A. Izaguirre, Mark S. Alber:
  A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis. 670-681

Computer programs in physics

• 
  K. T. Vu, John C. Butcher, J. Carminati:
  Similarity solutions of partial differential equations using DESOLV. 682-693
• 
  Zachary H. Levine, Alex Volkovitsky, Howard K. Hung:
  Alignment of fiducial marks in a tomographic tilt series with an unknown rotation axis. 694-700
• 
  E. Pleguezuelos, Artur Carnicer, J. Andilla, Estela Martín-Badosa, M. Montes-Usategui:
  HoloTrap: Interactive hologram design for multiple dynamic optical trapping. 701-709

New version announcements

• 
  Georg M. von Hippel:
  New version announcement for TaylUR, an arbitrary-order diagonal automatic differentiation package for Fortran 95. 710-711
• 
  Thomas Hahn:
  Cuba - a library for multidimensional numerical integration. 712-713