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Ruopeng Xie
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2020 – today
- 2021
- [j7]Ruopeng Xie, Jiahui Li
, Jiawei Wang
, Wei Dai, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Trevor Lithgow, Jiangning Song
, Yanju Zhang
:
DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy. Briefings Bioinform. 22(3) (2021) - [j6]Jiawei Wang
, Wei Dai, Jiahui Li
, Qi Li, Ruopeng Xie, Yanju Zhang
, Christopher Stubenrauch
, Trevor Lithgow
:
AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. Nucleic Acids Res. 49(Database-Issue): D630-D638 (2021) - [j5]Jiawei Wang
, Jiahui Li
, Yi Hou, Wei Dai, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Tieli Zhou, Von Torres
, Iain Hay
, Christopher Stubenrauch
, Yanju Zhang
, Jiangning Song
, Trevor Lithgow
:
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. Nucleic Acids Res. 49(Database-Issue): D651-D659 (2021) - 2020
- [j4]Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li
, André Leier
, Tatiana T. Marquez-Lago, Tatsuya Akutsu
, Alexander Ian Smith, Zongyuan Ge
, Jiawei Wang
, Trevor Lithgow, Jiangning Song
:
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. Bioinform. 36(3): 704-712 (2020) - [j3]Jiawei Wang
, Wei Dai, Jiahui Li
, Ruopeng Xie, Rhys A. Dunstan
, Christopher Stubenrauch
, Yanju Zhang
, Trevor Lithgow
:
PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins. Nucleic Acids Res. 48(Webserver-Issue): W348-W357 (2020)
2010 – 2019
- 2019
- [j2]Yanju Zhang, Ruopeng Xie, Jiawei Wang
, André Leier
, Tatiana T. Marquez-Lago, Tatsuya Akutsu
, Geoffrey I. Webb
, Kuo-Chen Chou, Jiangning Song
:
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform. 20(6): 2185-2199 (2019) - [j1]Jiawei Wang
, Jiahui Li
, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier
, Morihiro Hayashida, Tatsuya Akutsu
, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig
, Tieli Zhou, Jiangning Song
, Trevor Lithgow:
Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinform. 35(12): 2017-2028 (2019)
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