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2020 – today
- 2024
[i5]Jiaojiao Guan, Yongxin Ji, Cheng Peng, Wei Zou, Xubo Tang, Jiayu Shang, Yanni Sun:
PhaGO: Protein function annotation for bacteriophages by integrating the genomic context. CoRR abs/2408.06402 (2024)- 2023
- [j12]Jing-Zhe Jiang
, Wen-Guang Yuan, Jiayu Shang, Ying-Hui Shi, Li-Ling Yang, Min Liu, Peng Zhu, Tao Jin, Yanni Sun, Li-Hong Yuan:
Virus classification for viral genomic fragments using PhaGCN2. Briefings Bioinform. 24(1) (2023) - [j11]Jiayu Shang, Xubo Tang, Yanni Sun:
PhaTYP: predicting the lifestyle for bacteriophages using BERT. Briefings Bioinform. 24(1) (2023) - [j10]Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun:
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Bioinform. 39(5) (2023) - [j9]Herui Liao, Jiayu Shang, Yanni Sun:
GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data. Bioinform. 39(12) (2023) - [j8]Jiayu Shang, Cheng Peng, Xubo Tang, Yanni Sun:
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer. Bioinform. 39(Supplement-1): 30-39 (2023) - 2022
- [j7]Xubo Tang, Jiayu Shang, Yanni Sun:
RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data. Briefings Bioinform. 23(2) (2022) - [j6]Jiayu Shang, Xubo Tang, Ruocheng Guo, Yanni Sun:
Accurate identification of bacteriophages from metagenomic data using Transformer. Briefings Bioinform. 23(4) (2022) - [j5]Jiayu Shang, Yanni Sun:
CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model. Briefings Bioinform. 23(5) (2022) - [j4]Dehan Cai, Jiayu Shang, Yanni Sun:
HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization. Bioinform. 38(24): 5360-5367 (2022) - [i4]Jiayu Shang, Yanni Sun:
CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model. CoRR abs/2201.01018 (2022) - 2021
- [j3]Jiayu Shang, Jingzhe Jiang, Yanni Sun:
Bacteriophage classification for assembled contigs using graph convolutional network. Bioinform. 37(Supplement): 25-33 (2021) - [i3]Jiayu Shang, Jingzhe Jiang, Yanni Sun:
Bacteriophage classification for assembled contigs using Graph Convolutional Network. CoRR abs/2102.03746 (2021) - [i2]Jiayu Shang, Yanni Sun:
Detecting the hosts of bacteriophages using GCN-based semi-supervised learning. CoRR abs/2105.13570 (2021) - 2020
- [i1]Du Nan, Jiayu Shang, Yanni Sun:
ProDOMA: improve PROtein DOMAin classification for third-generation sequencing reads using deep learning. CoRR abs/2009.12591 (2020)
2010 – 2019
- 2019
- [j2]Jiao Chen, Jiayu Shang, Jianrong Wang, Yanni Sun:
A binning tool to reconstruct viral haplotypes from assembled contigs. BMC Bioinform. 20(1): 544:1-544:13 (2019) - 2018
- [j1]Shiren Li, Jiayu Shang, Zhikui Duan, Junwei Huang:
Fast detection method of quick response code based on run-length coding. IET Image Process. 12(4): 546-551 (2018)
Coauthor Index
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