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ORCIDGeoffrey A. Sonn
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2020 – today
- 2024
[j8]Wei Shao
, Sulaiman Vesal, Simon J. C. Soerensen, Indrani Bhattacharya, Negar Golestani, Rikiya Yamashita, Christian A. Kunder, Richard E. Fan, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
RAPHIA: A deep learning pipeline for the registration of MRI and whole-mount histopathology images of the prostate. Comput. Biol. Medicine 173: 108318 (2024)- [i14]Julia Di, Zdravko Dugonjic, Will Fu, Tingfan Wu, Romeo Mercado, Kevin Sawyer, Victoria Rose Most, Gregg Kammerer, Stefanie Speidel, Richard E. Fan, Geoffrey A. Sonn, Mark R. Cutkosky, Mike Lambeta, Roberto Calandra:
Using Fiber Optic Bundles to Miniaturize Vision-Based Tactile Sensors. CoRR abs/2403.05500 (2024) - 2023
- [j7]Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich:
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. IEEE Trans. Medical Imaging 42(3): 697-712 (2023) - [c14]Indrani Bhattacharya, Sulaiman Vesal, Hassan Jahanandish, Moonhyung Choi, Steve Ran Zhou, Zachary Kornberg, Elijah Richard Sommer, Richard E. Fan, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
MIC-CUSP: Multimodal Image Correlations for Ultrasound-Based Prostate Cancer Detection. ASMUS@MICCAI 2023: 121-131 - [c13]Cynthia Xinran Li, Indrani Bhattacharya, Sulaiman Vesal, Sara L. Saunders, Simon John Christoph Soerensen, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu:
Improving Automated Prostate Cancer Detection and Classification Accuracy with Multi-scale Cancer Information. MLMI@MICCAI (1) 2023: 341-350 - [i13]Sulaiman Vesal, Indrani Bhattacharya, Hassan Jahanandish, Cynthia Xinran Li, Zachary Kornberg, Steve Ran Zhou, Elijah Richard Sommer, Moonhyung Choi, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu:
ProsDectNet: Bridging the Gap in Prostate Cancer Detection via Transrectal B-mode Ultrasound Imaging. CoRR abs/2312.05334 (2023) - 2022
- [j6]Indrani Bhattacharya, Arun Seetharaman, Christian Kunder, Wei Shao, Leo C. Chen, Simon John Christoph Soerensen, Jeffrey B. Wang, Nikola C. Teslovich, Richard E. Fan, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
Selective identification and localization of indolent and aggressive prostate cancers via CorrSigNIA: an MRI-pathology correlation and deep learning framework. Medical Image Anal. 75: 102288 (2022) - [j5]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. 78: 102427 (2022) - [j4]Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu:
Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. Medical Image Anal. 82: 102620 (2022) - [c12]Indrani Bhattacharya, Wei Shao, Simon J. C. Soerensen, Richard E. Fan, Jeffrey B. Wang, Christian Kunder, Pejman Ghanouni, Geoffrey A. Sonn, Mirabela Rusu:
Integrating zonal priors and pathomic MRI biomarkers for improved aggressive prostate cancer detection on MRI. Medical Imaging: Computer-Aided Diagnosis 2022 - [c11]Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu:
Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. MICCAI (6) 2022: 237-247 - [i12]Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu:
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR abs/2202.09798 (2022) - [i11]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR abs/2203.14258 (2022) - [i10]Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu:
Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration. CoRR abs/2207.06189 (2022) - [i9]Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu:
Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study. CoRR abs/2209.02126 (2022) - [i8]Karin Stacke, Indrani Bhattacharya, Justin R. Tse, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
Correlated Feature Aggregation by Region Helps Distinguish Aggressive from Indolent Clear Cell Renal Cell Carcinoma Subtypes on CT. CoRR abs/2209.14657 (2022) - 2021
- [j3]Wei Shao, Linda Banh, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Nikola C. Teslovich, Nikhil Madhuripan, Anugayathri Jawahar, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
ProsRegNet: A deep learning framework for registration of MRI and histopathology images of the prostate. Medical Image Anal. 68: 101919 (2021) - [j2]Rewa Sood, Wei Shao, Christian Kunder, Nikola C. Teslovich, Jeffrey B. Wang, Simon John Christoph Soerensen, Nikhil Madhuripan, Anugayathri Jawahar, James D. Brooks, Pejman Ghanouni, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu:
3D Registration of pre-surgical prostate MRI and histopathology images via super-resolution volume reconstruction. Medical Image Anal. 69: 101957 (2021) - [j1]Idan Steinberg, Jeesu Kim, Martin K. Schneider, Dongwoon Hyun, Aimen Zlitni, Sarah M. Hopper, Tal Klap, Geoffrey A. Sonn, Jeremy J. Dahl, Chulhong Kim, Sanjiv Sam Gambhir:
Superiorized Photo-Acoustic Non-NEgative Reconstruction (SPANNER) for Clinical Photoacoustic Imaging. IEEE Trans. Medical Imaging 40(7): 1888-1897 (2021) - [c10]Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu:
Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI 2021: 755-766 - [c9]Amir Bolous, Arun Seetharaman, Indrani Bhattacharya, Richard E. Fan, Simon John Christoph Soerensen, Leo C. Chen, Pejman Ghanouni, Geoffrey A. Sonn, Mirabela Rusu:
Clinically significant prostate cancer detection on MRI with self-supervised learning using image context restoration. Medical Imaging: Computer-Aided Diagnosis 2021 - [c8]Thomas DeSilvio, Stefania Moroianu, Indrani Bhattacharya, Arun Seetharaman, Geoffrey A. Sonn, Mirabela Rusu:
Intensity normalization of prostate MRIs using conditional generative adversarial networks for cancer detection. Medical Imaging: Computer-Aided Diagnosis 2021 - [c7]Wei Shao, Indrani Bhattacharya, Simon John Christoph Soerensen, Christian A. Kunder, Jeffrey B. Wang, Richard E. Fan, Pejman Ghanouni, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
Weakly Supervised Registration of Prostate MRI and Histopathology Images. MICCAI (4) 2021: 98-107 - [c6]Wei Shao, Sulaiman Vesal, David S. Lim, Cynthia Xinran Li, Negar Golestani, Ahmed Alsinan, Richard E. Fan, Geoffrey A. Sonn, Mirabela Rusu:
The Learn2Reg 2021 MICCAI Grand Challenge (PIMed Team). MIDOG/MOOD/Learn2Reg@MICCAI 2021: 168-173 - [c5]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI 2021: 191-201 - [c4]Simon John Christoph Soerensen, Richard E. Fan, Arun Seetharaman, Leo C. Chen, Wei Shao, Indrani Bhattacharya, Michael Borre, Benjamin Chung, Katherine J. To'o, Geoffrey A. Sonn, Mirabela Rusu:
ProGNet: prostate gland segmentation on MRI with deep learning. Medical Imaging: Image Processing 2021 - [i7]Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu:
Learning image quality assessment by reinforcing task amenable data selection. CoRR abs/2102.07615 (2021) - [i6]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR abs/2108.04359 (2021) - [i5]Indrani Bhattacharya, David S. Lim, Han Lin Aung, Xingchen Liu, Arun Seetharaman, Christian A. Kunder, Wei Shao, Simon John Christoph Soerensen, Richard E. Fan, Pejman Ghanouni, Katherine J. To'o, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
Bridging the gap between prostate radiology and pathology through machine learning. CoRR abs/2112.02164 (2021) - [i4]Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Huaqi Qiu, Zeju Li, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich:
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. CoRR abs/2112.04489 (2021) - 2020
- [c3]Indrani Bhattacharya, Arun Seetharaman, Wei Shao, Rewa Sood, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Pejman Ghanouni, Nikola C. Teslovich, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis. MICCAI (2) 2020: 315-325 - [i3]Indrani Bhattacharya, Arun Seetharaman, Wei Shao, Rewa Sood, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Pejman Ghanouni, Nikola C. Teslovich, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu:
CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis. CoRR abs/2008.00119 (2020)
2010 – 2019
- 2019
- [c2]John A. Onofrey, Dana I. Casetti-Dinescu, Andreas D. Lauritzen, Saradwata Sarkar, Rajesh Venkataraman, Richard E. Fan, Geoffrey A. Sonn, Preston C. Sprenkle, Lawrence H. Staib, Xenophon Papademetris:
Generalizable Multi-Site Training and Testing Of Deep Neural Networks Using Image Normalization. ISBI 2019: 348-351 - [c1]Mirabela Rusu, Christian Kunder, Richard E. Fan, Pejman Ghanouni, Robert B. West, Geoffrey A. Sonn, James D. Brooks:
Framework for the co-registration of MRI and histology images in prostate cancer patients with radical prostatectomy. Medical Imaging: Image Processing 2019: 109491P - [i2]Okyaz Eminaga, Yuri Tolkach, Christian Kunder, Mahmoud Abbas, Ryan Han, Rosalie Nolley, Axel Semjonow, Martin Boegemann, Sebastian Huss, Andreas M. Loening, Robert B. West, Geoffrey A. Sonn, Richard E. Fan, Olaf Bettendorf, James D. Brooks, Daniel L. Rubin:
Deep Learning for Prostate Pathology. CoRR abs/1910.04918 (2019) - 2016
- [i1]Imon Banerjee, Lewis Hahn, Geoffrey A. Sonn, Richard E. Fan, Daniel L. Rubin:
Computerized Multiparametric MR image Analysis for Prostate Cancer Aggressiveness-Assessment. CoRR abs/1612.00408 (2016)
Coauthor Index
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