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ORCIDRafaela Salgado Ferreira
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2020 – today
- 2024
[j11]Mateus Sá Magalhães Serafim
, Thales Kronenberger, Rafael Eduardo Oliveira Rocha, Amanda Del Rio Abreu Rosa, Thaysa Lara Gonçalves Mello, Antti Poso, Rafaela Salgado Ferreira, Jonatas Santos Abrahão, Erna Geessien Kroon, Bruno Eduardo Fernandes Mota, Vinicius Gonçalves Maltarollo:
Aminopyrimidine Derivatives as Multiflavivirus Antiviral Compounds Identified from a Consensus Virtual Screening Approach. J. Chem. Inf. Model. 64(2): 393-411 (2024)- 2023
- [j10]Luan Carvalho Martins, Renata Barbosa de Oliveira, Jerônimo Lameira, Rafaela Salgado Ferreira:
Experimental and Computational Study of Aryl-thiosemicarbazones Inhibiting Cruzain Reveals Reversible Inhibition and a Stepwise Mechanism. J. Chem. Inf. Model. 63(5): 1506-1520 (2023) - 2022
- [j9]Naiá Porã Santos, Lucianna Helene Santos, Mariana Torquato Quezado de Magalhães, Jian Lei, Rolf Hilgenfeld, Rafaela Salgado Ferreira, Lucas Bleicher:
Characterization of an Allosteric Pocket in Zika Virus NS2B-NS3 Protease. J. Chem. Inf. Model. 62(4): 945-957 (2022) - [j8]Alexandre V. Fassio, Laura Shub, Luca Ponzoni, Jessica McKinley, Matthew J. O'Meara, Rafaela Salgado Ferreira, Michael J. Keiser, Raquel Cardoso de Melo Minardi:
Prioritizing Virtual Screening with Interpretable Interaction Fingerprints. J. Chem. Inf. Model. 62(18): 4300-4318 (2022) - [j7]Lucianna Helene Santos, Thales Kronenberger, Renata G. Almeida, Elany B. Silva, Rafael E. O. Rocha, Joyce C. Oliveira, Luiza V. Barreto, Danielle Skinner, Pavla Fajtová, Miriam A. Giardini, Brendon Woodworth, Conner Bardine, André L. Lourenço, Charles S. Craik, Antti Poso, Larissa M. Podust, James H. McKerrow, Jair L. Siqueira-Neto, Anthony J. O'Donoghue, Eufrânio N. da Silva Júnior, Rafaela Salgado Ferreira:
Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease Mpro and Papain-like Protease PLpro of SARS-CoV-2. J. Chem. Inf. Model. 62(24): 6553-6573 (2022) - 2020
- [j6]Mariana Laureano de Souza, Celso de Oliveira Rezende Junior, Rafaela Salgado Ferreira, Rocio Marisol Espinoza Chávez, Leonardo L. G. Ferreira, Brian W. Slafer, Luma G. Magalhães, Renata Krogh, Glaucius Oliva, Fabio Cardoso Cruz, Luiz Carlos Dias, Adriano D. Andricopulo:
Discovery of Potent, Reversible, and Competitive Cruzain Inhibitors with Trypanocidal Activity: A Structure-Based Drug Design Approach. J. Chem. Inf. Model. 60(2): 1028-1041 (2020) - [j5]Alexandre V. Fassio, Lucianna Helene Santos, Sabrina de Azevedo Silveira, Rafaela Salgado Ferreira, Raquel Cardoso de Melo Minardi:
nAPOLI: A Graph-Based Strategy to Detect and Visualize Conserved Protein-Ligand Interactions in Large-Scale. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1317-1328 (2020)
2010 – 2019
- 2019
- [j4]Lucianna Helene Santos, Birgit J. Waldner, Julian E. Fuchs, Glaécia A. N. Pereira, Klaus R. Liedl, Ernesto Raúl Caffarena, Rafaela Salgado Ferreira:
Understanding Structure-Activity Relationships for Trypanosomal Cysteine Protease Inhibitors by Simulations and Free Energy Calculations. J. Chem. Inf. Model. 59(1): 137-148 (2019) - 2018
- [j3]Luan Carvalho Martins, Pedro Henrique Monteiro Torres, Renata Barbosa de Oliveira, Pedro Geraldo Pascutti, Elio A. Cino, Rafaela Salgado Ferreira:
Investigation of the binding mode of a novel cruzain inhibitor by docking, molecular dynamics, ab initio and MM/PBSA calculations. J. Comput. Aided Mol. Des. 32(5): 591-605 (2018) - 2016
- [j2]Edson Luiz Folador, Paulo Vinícius Sanches Daltro de Carvalho, Wanderson Marques Silva, Rafaela Salgado Ferreira, Artur Silva, M. Michael Gromiha, Preetam Ghosh, Debmalya Barh, Vasco Ariston de Carvalho Azevedo, Richard Röttger:
In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks. BMC Syst. Biol. 10: 103:1-103:9 (2016) - [j1]Raoni Almeida de Souza, Natalia Díaz, Ronaldo Alves Pinto Nagem, Rafaela Salgado Ferreira, Dimas Suárez:
Unraveling the distinctive features of hemorrhagic and non-hemorrhagic snake venom metalloproteinases using molecular simulations. J. Comput. Aided Mol. Des. 30(1): 69-83 (2016)
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