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Journal Articles
- 2025
[j2]Robrecht Cannoodt
, Louise Deconinck, Artuur Couckuyt, Nikolay S. Markov, Luke Zappia, Malte D. Lücken, Marta Interlandi, Yvan Saeys, Wouter Saelens:
funkyheatmap: Visualising data frames with mixed data types. J. Open Source Softw. 10(109): 7698 (2025)- 2018
- [j1]Malte Lücken, M. J. T. Page, A. J. Crosby, S. Mason, Gesine Reinert, Charlotte M. Deane:
CommWalker: correctly evaluating modules in molecular networks in light of annotation bias. Bioinform. 34(6): 994-1000 (2018)
Conference and Workshop Papers
- 2024
- [c4]Artur Szalata, Andrew Benz, Robrecht Cannoodt, Mauricio Cortes, Jason Fong, Sunil Kuppasani, Richard Lieberman, Tianyu Liu, Javier Mas-Rosario, Rico Meinl, Jalil Nourisa, Jared Tumiel, Tin M. Tunjic, Mengbo Wang, Noah Weber, Hongyu Zhao, Benedict Anchang, Fabian J. Theis, Malte Luecken, Daniel Burkhardt:
A benchmark for prediction of transcriptomic responses to chemical perturbations across cell types. NeurIPS 2024 - 2021
- [c3]Christopher Lance, Malte D. Lücken, Daniel B. Burkhardt, Robrecht Cannoodt, Pia Rautenstrauch, Anna Laddach, Aidyn Ubingazhibov, Zhi-Jie Cao, Kaiwen Deng, Sumeer Khan, Qiao Liu, Nikolay Russkikh, Gleb Ryazantsev, Uwe Ohler, Angela Oliveira Pisco, Jonathan Bloom, Smita Krishnaswamy, Fabian J. Theis:
Multimodal single cell data integration challenge: Results and lessons learned. NeurIPS (Competition and Demos) 2021: 162-176 - [c2]Malte Lücken, Daniel Burkhardt, Robrecht Cannoodt, Christopher Lance, Aditi Agrawal, Hananeh Aliee, Ann Chen, Louise Deconinck, Angela Detweiler, Alejandro Granados, Shelly Huynh, Laura Isacco, Yang Kim, Dominik Klein, Bony de Kumar, Sunil Kuppasani, Heiko Lickert, Aaron McGeever, Joaquin Melgarejo, Honey Mekonen, Maurizio Morri, Michaela Müller, Norma Neff, Sheryl Paul, Bastian Rieck, Kaylie Schneider, Scott Steelman, Michael Sterr, Daniel Treacy, Alexander Tong, Alexandra-Chloé Villani, Guilin Wang, Jia Yan, Ce Zhang, Angela Pisco, Smita Krishnaswamy, Fabian J. Theis, Jonathan M. Bloom:
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells. NeurIPS Datasets and Benchmarks 2021 - 2015
- [c1]Malte Lücken, Gerd Bruder, Frank Steinicke:
Evaluation von Buttons im Kontext des Gestaltungsstils Flat Design. MuC 2015: 307-310
Data and Artifacts
- 2024
- [d2]Aristeidis Papargyriou, Till Richter, Malte Luecken, Fabian J. Theis, Maximilian Reichert:
Single cell transcriptomic analysis of epithelial and mesenchymal tumour cells. Version 1. Zenodo, 2024 [all versions]
- [d1]Aristeidis Papargyriou, Till Richter, Malte Luecken, Fabian J. Theis, Maximilian Reichert:
Single cell transcriptomic analysis of epithelial and mesenchymal tumour cells. Version 2. Zenodo, 2024 [all versions]
Informal and Other Publications
- 2022
- [i1]Jan P. Engelmann, Leon Hetzel, Giovanni Palla, Lisa Sikkema, Malte Lücken, Fabian J. Theis:
Uncertainty Quantification for Atlas-Level Cell Type Transfer. CoRR abs/2211.03793 (2022)
Coauthor Index
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