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ORCIDJohn F. Rudan
- > Home > Persons > John F. Rudan
Publications
- 2025
[j20]Mohammad Farahmand
, Amoon Jamzad, Fahimeh Fooladgar, Laura Connolly, Martin Kaufmann, Kevin Yi Mi Ren, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
FACT: foundation model for assessing cancer tissue margins with mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 20(6): 1097-1104 (2025)- [i1]Mohammad Farahmand, Amoon Jamzad, Fahimeh Fooladgar, Laura Connolly, Martin Kaufmann, Kevin Yi Mi Ren, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
FACT: Foundation Model for Assessing Cancer Tissue Margins with Mass Spectrometry. CoRR abs/2504.11519 (2025) - 2024
- [j19]Laura Connolly, Fahimeh Fooladgar, Amoon Jamzad, Martin Kaufmann, Ayesha Syeda, Kevin Yi Mi Ren, Purang Abolmaesumi, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
ImSpect: Image-driven self-supervised learning for surgical margin evaluation with mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1129-1136 (2024) - [j18]Chris Yeung, Tamas Ungi, Zoe Hu, Amoon Jamzad, Martin Kaufmann, Ross Walker, Shaila Merchant, Cecil Jay Engel, Doris Jabs, John F. Rudan, Parvin Mousavi, Gabor Fichtinger:
From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1193-1201 (2024) - [c36]Jade Warren, Amoon Jamzad, Tamara Jamaspishvili, Rachael Iseman, Ayesha Syeda, Martin Kaufmann, John F. Rudan, Gabor Fichtinger, David M. Berman, Parvin Mousavi:
Towards Improving Surgical Margins in Tumour Resection Using Mass Spectrometry Imaging. CCECE 2024: 554-558 - 2023
- [c35]Amoon Jamzad, Fahimeh Fooladgar, Laura Connolly, Dilakshan Srikanthan, Ayesha Syeda, Martin Kaufmann, Kevin Yi Mi Ren, Shaila Merchant, Cecil Jay Engel, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Bridging Ex-Vivo Training and Intra-operative Deployment for Surgical Margin Assessment with Evidential Graph Transformer. MICCAI (7) 2023: 562-571 - [c34]Josh Ehrlich, Chris Yeung, Martin Kaufman, Amoon Jamzad, John F. Rudan, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Determining the time-delay of a mass spectrometry-based tissue sensor. Image-Guided Procedures 2023 - [c33]Hanad Elmi, Amoon Jamzad, Mackenzie Sharp, Jessica R. Rodgers, Martin Kaufmann, Tamara Jamaspishvili, Rachael Iseman, David Berman, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
ViPRE: an open-source software implementation for end-to-end analysis of mass spectrometry data. Image-Guided Procedures 2023 - [c32]Lucas March, Jessica R. Rodgers, Rebecca Hisey, Amoon Jamzad, Alice M. L. Santilli, Doug McKay, John F. Rudan, Martin Kaufmann, Kevin Yi Mi Ren, Gabor Fichtinger, Parvin Mousavi:
Cautery tool state detection using deep learning on intraoperative surgery videos. Image-Guided Procedures 2023 - [c31]David Morton, Laura Connolly, Leah A. Groves, Kyle Sunderland, Amoon Jamzad, John F. Rudan, Gabor Fichtinger, Tamas Ungi, Parvin Mousavi:
Tracked tissue sensing for tumor bed inspection. Image-Guided Procedures 2023 - [c30]Olivia Radcliffe, Laura Connolly, Tamas Ungi, Caitlin T. Yeo, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Navigated surgical resection cavity inspection for breast conserving surgery. Image-Guided Procedures 2023 - [c29]Dilakshan Srikanthan, Martin Kaufmann, Amoon Jamzad, Ayesha Syeda, Alice M. L. Santilli, Alireza Sedghi, Gabor Fichtinger, Jamie Purzner, John F. Rudan, Teresa Purzner, Parvin Mousavi:
Attention-based multi-instance learning for improved glioblastoma detection using mass spectrometry. Image-Guided Procedures 2023 - [c28]Ayesha Syeda, Fahimeh Fooladgar, Amoon Jamzad, Dilakshan Srikanthan, Martin Kaufmann, Kevin Yi Mi Ren, Cecil Jay Engel, Ross Walker, Shaila Merchant, Doug McKay, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Self-supervised learning and uncertainty estimation for surgical margin detection. Image-Guided Procedures 2023 - [c27]Chris Yeung, Joshua Ehrlich, Amoon Jamzad, Martin Kaufmann, John F. Rudan, Cecil Jay Engel, Parvin Mousavi, Tamas Ungi, Gabor Fichtinger:
Cautery trajectory analysis for evaluation of resection margins in breast-conserving surgery. Image-Guided Procedures 2023 - 2022
- [j17]Zoe Hu, Paola V. Nasute Fauerbach, Chris Yeung, Tamas Ungi, John F. Rudan, Cecil Jay Engel, Parvin Mousavi, Gabor Fichtinger, Doris Jabs:
Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation. Int. J. Comput. Assist. Radiol. Surg. 17(9): 1663-1672 (2022) - [j16]Fahimeh Fooladgar, Amoon Jamzad, Laura Connolly, Alice M. L. Santilli, Martin Kaufmann, Kevin Yi Mi Ren, Purang Abolmaesumi, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
Uncertainty estimation for margin detection in cancer surgery using mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 17(12): 2305-2313 (2022) - [j15]Joshua Ehrlich, Amoon Jamzad, Mark Asselin, Jessica Robin Rodgers, Martin Kaufmann, Tamás Haidegger, John F. Rudan, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Sensor-Based Automated Detection of Electrosurgical Cautery States. Sensors 22(15): 5808 (2022) - [j14]Alice Maria Leondina Santilli, Kevin Yi Mi Ren, Richard Oleschuk, Martin Kaufmann, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Application of Intraoperative Mass Spectrometry and Data Analytics for Oncological Margin Detection, A Review. IEEE Trans. Biomed. Eng. 69(7): 2220-2232 (2022) - [c26]Laura Connolly, Amoon Jamzad, Arash Nikniazi, Rana Poushimin, Jean-Michel Nunzi, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Feasibility of combined optical and acoustic imaging for surgical cavity scanning. Image-Guided Procedures 2022 - [c25]Lucas March, Jessica Robin Rodgers, Amoon Jamzad, Alice M. L. Santilli, Rebecca Hisey, Doug McKay, John F. Rudan, Martin Kaufmann, Kevin Yi Mi Ren, Gabor Fichtinger, Parvin Mousavi:
Phase recognition and cautery localization in basal cell carcinoma surgical videos. Image-Guided Procedures 2022 - 2021
- [j13]Alice M. L. Santilli, Amoon Jamzad, Alireza Sedghi, Martin Kaufmann, Kathryn Logan, Julie Wallis, Kevin Yi Mi Ren, Natasja N. Y. Janssen, Shaila Merchant, Cecil Jay Engel, Doug McKay, Sonal Varma, Ami Wang, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Domain adaptation and self-supervised learning for surgical margin detection. Int. J. Comput. Assist. Radiol. Surg. 16(5): 861-869 (2021) - [j12]Laura Connolly, Amoon Jamzad, Martin Kaufmann, Catriona E. Farquharson, Kevin Yi Mi Ren, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Combined Mass Spectrometry and Histopathology Imaging for Perioperative Tissue Assessment in Cancer Surgery. J. Imaging 7(10): 203 (2021) - [c24]Alice M. L. Santilli, Amoon Jamzad, Alireza Sedghi, Martin Kaufmann, Shaila Merchant, Cecil Jay Engel, Kathryn Logan, Julie Wallis, Natasja N. Y. Janssen, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data. ISBI 2021: 980-984 - [c23]Amoon Jamzad, Alice M. L. Santilli, Faranak Akbarifar, Martin Kaufmann, Kathryn Logan, Julie Wallis, Kevin Yi Mi Ren, Shaila Merchant, Cecil Jay Engel, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Graph Transformers for Characterization and Interpretation of Surgical Margins. MICCAI (7) 2021: 88-97 - [c22]Faranak Akbarifar, Amoon Jamzad, Alice M. L. Santilli, M. Kauffman, Natasja N. Y. Janssen, Laura Connolly, Kevin Yi Mi Ren, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery. Image-Guided Procedures 2021 - 2020
- [j11]Brandon Chan, John F. Rudan, Parvin Mousavi, Manuela Kunz:
Intraoperative integration of structured light scanning for automatic tissue classification: a feasibility study. Int. J. Comput. Assist. Radiol. Surg. 15(4): 641-649 (2020) - [j10]Alice M. L. Santilli, Amoon Jamzad, Natasja N. Y. Janssen, Martin Kaufmann, Laura Connolly, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Perioperative margin detection in basal cell carcinoma using a deep learning framework: a feasibility study. Int. J. Comput. Assist. Radiol. Surg. 15(5): 887-896 (2020) - [j9]Natasja N. Y. Janssen, Martin Kaufmann, Alice M. L. Santilli, Amoon Jamzad, Kaitlin Vanderbeck, Kevin Yi Mi Ren, Tamas Ungi, Parvin Mousavi, John F. Rudan, Doug McKay, Ami Wang, Gabor Fichtinger:
Navigated tissue characterization during skin cancer surgery. Int. J. Comput. Assist. Radiol. Surg. 15(10): 1665-1672 (2020) - [c21]Justin Gerolami, Victoria Wu, Paolo Nasute Fauerbach, Doris Jabs, Cecil Jay Engel, John F. Rudan, Shaila Merchant, Ross Walker, Emran Mohammad Abu Anas, Purang Abolmaesumi, Gabor Fichtinger, Tamas Ungi, Parvin Mousavi:
An End-to-End Solution for Automatic Contouring of Tumor Region in Intraoperative Images of Breast Lumpectomy. EMBC 2020: 2003-2006 - [c20]Amoon Jamzad, Alireza Sedghi, Alice M. L. Santilli, Natasja N. Y. Janssen, Martin Kaufmann, Kevin Yi Mi Ren, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Improved Resection Margins in Surgical Oncology Using Intraoperative Mass Spectrometry. MICCAI (3) 2020: 44-53 - [c19]Laura Connolly, Amoon Jamzad, Martin Kaufmann, Rachel Rubino, Alireza Sedghi, Tamas Ungi, Mark Asselin, Scott Yam, John F. Rudan, Christopher Nicol, Gabor Fichtinger, Parvin Mousavi:
Classification of tumor signatures from electrosurgical vapors using mass spectrometry and machine learning: a feasibility study. Image-Guided Procedures 2020: 113150Q - 2019
- [c17]Brandon Chan, Jason Auyeung, John F. Rudan, Parvin Mousavi, Manuela Kunz:
Tissue classification using machine learning to aid in intraoperative registration: a pilot study. Image-Guided Procedures 2019: 1095136 - 2015
- [j3]Simrin Nagpal, Purang Abolmaesumi, Abtin Rasoulian, Ilker Hacihaliloglu, Tamas Ungi, Jill Osborn, Victoria A. Lessoway, John F. Rudan, Melanie Jaeger, Robert N. Rohling, Dan P. Borschneck, Parvin Mousavi:
A multi-vertebrae CT to US registration of the lumbar spine in clinical data. Int. J. Comput. Assist. Radiol. Surg. 10(9): 1371-1381 (2015)
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